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View Structure Prediction Details

Protein: CE12276
Organism: Caenorhabditis elegans
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12276.

Description E-value Query
Range
Subject
Range
gi|52629966, gi|... - gi|52842855|ref|YP_096654.1| GTP-binding protein, GTP1/Obg family [Legionella pneumophila subsp. pne...
301.0 [0..16] [358..42]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISLQKCSK TACSVLSKRP ILSPKKPKSE GEATSFIDYR RVRCQAGNGG NGMVSFFRGY  60
   61 RKPFGGPDGG DGGHGGHVVF RASRSSKDLS TVHSIVRAQN GEFGRSKSCH GKSADHKEVE 120
  121 VPLGTVFKAD GNTIFELNNE NDMFIAARGG VGGRGNQFYV SNEVRKPFKA EYGGEGEELI 180
  181 YDVEMRVMAT AGLVGFPNAG KSSLLRAISR AKPKVASYPF TTLHPHIGVV FYEDFEQIAV 240
  241 ADIPGLIEDS HLNKGLGISF LKHIERCESL WYVLDYSTGS LTDQYKMLRV ELEGYQKGLG 300
  301 DRASTIVINK IDLSGKSPEE EAHHLSSLFP NLPVFPVSAQ QRIGLEPLLE HLREQYDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.69897
Match: 1lnzA
Description: Obg GTP-binding protein N-terminal domain; Obg GTP-binding protein C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.37148167194523 bayes_pls_golite062009
binding 0.671939534213175 bayes_pls_golite062009
hydrolase activity 0.226001870533921 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle