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View Structure Prediction Details

Protein: CE11836
Organism: Caenorhabditis elegans
Length: 339 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11836.

Description E-value Query
Range
Subject
Range
gi|39579516, gi|... - gi|39579516|emb|CAE56341.1| Hypothetical protein CBG24013 [Caenorhabditis briggsae], gi|187040564|em...
282.0 [0..48] [338..51]

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Predicted Domain #1
Region A:
Residues: [1-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVNKRSLLI VCSCILFLAQ CIYVIGIFTR KPVEVAVEVT TEIPMNTTTT SAPVIVKDIL  60
   61 PGDHITEFIP PFVPLLNDYV ITENYNLHAC IVRKSMSQLT TNLMCYLSNT ALYEDRNRTL 120
  121 SDTWAARKGS CDNIAWSAYA PLYENGTMSM SRMTKLAFIR HPESRFVSFF VDKCINTNSC 180
  181 YGCRDLHCAV KLVYDRLMNH VQNRHLIDQS ESELWWFDWH AAPQTWNCDF YKHLTDYHLI 240
  241 KIGTSQKDRK LAMKQLQIAL KTANVEDKYI EKIMADTLVS DTKHGTHQSK SNLRILQQVR 300
  301 TDPYVRHYLH RIYYFDYVAF GFEIPEVYSA DLPEYPLRN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.2
Match: 1q44A
Description: Crystal Structure of an Arabidopsis Thaliana Putative Steroid Sulphotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.805174200700339 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle