| Protein: | nhx-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 634 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-6.
| Description | E-value | Query Range |
Subject Range |
|
|
422.0 | [0..1] | [629..5] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MSLIRRLSVV LIGLLLILGY AQAECDEKEE EVFPSRYPIA YFKWEEVKIP MTICLWLIAA 60
61 SISKIVFNSI PHLNDLFPDS ALLIMIGLII GIIFKLIGVD KNQFFL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [107-465] |
1 11 21 31 41 51
| | | | | |
1 ESEIFMLYLL PPLVFDAGYF MPARQFFDNF GSIMCFAMIG TLFNFLAISF SLWAISLTGL 60
61 FSVETPLLHM LLFGSVAADV DPVAVIVIFE ELAVNDVLFI AVFGESLFND GVSVVLYRMF 120
121 LTFSEIGAEN LIPEDFANGG VSFLVVVFGG VGIGVLFAFL ASLLTKYSRA EEISILNCVF 180
181 ILILPYTCYL CGELFGLSSI IAVVFCGALM RQYCRENVEQ ETVKATEKFI KVLSIASETV 240
241 IFVFLGLSTV SSNHHWDTCF IVLTVVFCLI YRTLGVVVMC HFLNKYRLNK YTKVDQFIMA 300
301 YGGLRGAIAY GLVVAIPDFI PAKNMFVTSC IIVIYFTVFL QGITLKPIAE FLQVEKKNV
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 1zcdA |
| Description: | Crystal structure of the Na+/H+ antiporter NhaA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [466-634] |
1 11 21 31 41 51
| | | | | |
1 HSKNMIEHIY TELIDTTMAG MEDIAGFKGH HWIRDSWNYF NNCYLRPVLV NKNNMKQMDK 60
61 TKLVRKYKHL VDEDAKKIAN GGDLKSNLAF TRALIEHTRS RTNTAITSDS NGKIDFVTHM 120
121 KEHHGITVYD HENNVEYTSD YMENESEDGE YKNGGFESDG SSDNFEERV
|
| Detection Method: | |
| Confidence: | 1.49 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.38049042607606 | bayes_pls_golite062009 |
| protein binding | 0.910693622624617 | bayes_pls_golite062009 |
