YRC Public Data Repository - Protein Structure Prediction

Protein:	bag-1
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bag-1.

Description	E-value	Query Range	Subject Range
gi\|157747565 - gi\|157747565\|ref\|XP_001668877.1\| Hypothetical protein CBG12655 [Caenorhabditis briggsae AF16] BAG1_CAEBR - BAG family molecular chaperone regulator 1 OS=Caenorhabditis briggsae GN=bag-1 PE=3 SV=1	300.0	[0..1]	[210..1]
gi\|109111198 - gi\|109111198\|ref\|XP_001090384.1\| PREDICTED: similar to BCL2-associated athanogene isoform 1L [Macaca...	270.0	[0..1]	[193..215]
gi\|73971741 - gi\|73971741\|ref\|XP_854585.1\| PREDICTED: similar to BAG-family molecular chaperone regulator-1 (BCL-2...	267.0	[0..1]	[193..170]
gi\|110611791 - gi\|110611791\|gb\|AAH02407.1\| Unknown (protein for IMAGE:2961537) [Homo sapiens]	262.0	[0..1]	[193..157]
gi\|114624364 - gi\|114624364\|ref\|XP_520528.2\| PREDICTED: similar to BAG1 protein [Pan troglodytes]	262.0	[0..1]	[193..152]
gi\|76646314 - gi\|76646314\|ref\|XP_583203.2\| PREDICTED: similar to BCL2-associated athanogene isoform 1L [Bos taurus...	262.0	[0..1]	[193..186]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVNVSCSSV QTTIDILEEN QGEDESILTL GQLRDRIATD NDVDVETMKL LHRGKFLQGA  60
   61 DDVSLSTLNF KENDKIIVMG GK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1wxvA
Description:	Solution structure of the ubiquitin domain of BCL-2 binding athanogene-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0934358341245259	bayes_pls_golite062009
protein binding	0.03789551947602	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [83-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NALVDDAGFK MLMQYEKHNL SNLQKAYDLN LRDVADLERG FLEKPKQVEM GKKLEKKVKY  60
   61 FNEEAERHLE TLDGMNIITE TTPENQAKRN REKRKTLVNG IQTLLNQNDA LLRRLQEYQS 120
  121 VLNGDIPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	1t7sA
Description:	Structural Genomics of Caenorhabditis elegans: Structure of BAG-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: