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View Structure Prediction Details

Protein: CE10118
Organism: Caenorhabditis elegans
Length: 282 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10118.

Description E-value Query
Range
Subject
Range
gi|109492061 - gi|109492061|ref|XP_001081563.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Rattus no...
255.0 [0..34] [280..279]
gi|292, gi|89501... - pir||S01167 cytochrome b561 - bovine, gi|292|emb|CAA31274.1| unnamed protein product [Bos taurus], ...
223.0 [0..24] [280..14]
CY561_PIG - Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1
220.0 [0..32] [280..1]
gi|73965357 - gi|73965357|ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis familia...
220.0 [0..32] [280..1]
CY561_MOUSE - Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=1 SV=2
219.0 [0..34] [280..4]
gi|114669809 - gi|114669809|ref|XP_511596.2| PREDICTED: similar to Cytochrome b-561 [Pan troglodytes]
217.0 [0..34] [280..11]
CY561_PONPY - Cytochrome b561 - Pongo pygmaeus (Orangutan)
CY561_PONAB - Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1
217.0 [0..39] [280..7]
gi|27597088, gi|... - ref|NP_001906.2| cytochrome b-561 [Homo sapiens], gi|12804235|gb|AAH02976.1| Cytochrome b-561 [Homo...
216.0 [0..39] [280..7]
gi|109116771 - gi|109116771|ref|XP_001116102.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Macaca mu...
216.0 [0..39] [280..7]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHFCYHFRL FFFSFKTQTD YITTTYFTLL NSFISTKIMS SLGYFEFAAS VTHLVGFITV  60
   61 CLNGYFFNTF YNGIGWPFEL KVGSTDARGL VEMRGKQLHG FLMFLGFIYL QGEALLSYRV 120
  121 YRFTTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [127-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVSILIHTFL HIASIVLAVG ALFSIILTIK YTGASHFSNI HSYLGVCLLL VYSGQLSFGF  60
   61 CTYLFKCTPK DYQSRLMPVH RAVGISCMVV ACVQCCLGYN QMVSGKLSCF KDLSCANRIE 120
  121 YVGSLSMIFN IIYTIMVVSV VIPKPWRREK ETIKIN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1kqfC
Description: Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transmembrane transporter activity 0.942497319345969 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.896318491404551 bayes_pls_golite062009
cation transmembrane transporter activity 0.895333340227682 bayes_pls_golite062009
ion transmembrane transporter activity 0.879451417730142 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.764786590709658 bayes_pls_golite062009
substrate-specific transporter activity 0.749514131966029 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.714084754513708 bayes_pls_golite062009
transporter activity 0.549956604551934 bayes_pls_golite062009
transmembrane transporter activity 0.548017930612901 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 0.459313015191464 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 0.459313015191464 bayes_pls_golite062009
electron carrier activity 0.356620187487456 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 0.253424481407976 bayes_pls_golite062009
catalytic activity 0.215283230251342 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle