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View Structure Prediction Details

Protein: pas-5
Organism: Caenorhabditis elegans
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pas-5.

Description E-value Query
Range		 Subject
Range
gi|218186097 - gi|218186097|gb|EEC68524.1| hypothetical protein OsI_36813 [Oryza sativa Indica Group]
PSA5_ORYSJ - Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1
PSA5_ORYSA - Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subun...
 271.0 [0..1] [248..1]
PSA5A_ARATH - Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1
 269.0 [0..1] [248..1]
gi|16943777 - gi|16943777|emb|CAD10778.1| 20S proteasome subunit alpha V [Physcomitrella patens]
 268.0 [0..1] [248..1]
PSA5_SOYBN - Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
 267.0 [0..1] [248..1]
gi|1498589 - gi|1498589|gb|AAB93421.1| 20S proteasome alpha subunit PSMA5 [Drosophila melanogaster]
 264.0 [0..1] [248..1]
gi|31211921, gi|... - gi|31211921|ref|XP_314945.1| AGAP008816-PA [Anopheles gambiae str. PEST], gi|30176407|gb|EAA10150.2|...
AGAP008816-PA - 20S proteasome subunit alpha 5|protein_coding|3R:18292958:18293846:1|gene:AGAP008816
 262.0 [0..1] [248..1]
PSMA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1
PSA_METKA - Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) ...
 262.0 [0..4] [248..6]
PSA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=psmA PE=3 SV=1
PSMA_PYRAB - Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1
 262.0 [0..5] [245..7]

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Predicted Domain #1
Region A:
Residues: [1-248] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTRSEYDR GVNTFSPEGR LFQVEYAIEA VKLGSTSIGI KTSEGVLLAA EKRSTSKLMV  60
   61 NDAIEKISKV DQHIGVTFAG LIADSRTLVE RAQIEAQNFW FTYNRKIRVE DVTQSVANLA 120
  121 LQFGDDDVKA SMSRPFGVAM LFAGVDQEGA KLFHLDPSGT FIDCKAKSIG AASDGAEQNL 180
  181 KEQYHDALTI KEGLKMALAI LKQVMEEKLN SANVEVVVIK PTVDAKGRPI GEFTRVSNEE 240
  241 LDQVITSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 1iruE
Description: Proteasome alpha subunit (non-catalytic)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
endopeptidase activity 6.91642761177919 bayes_pls_golite062009
peptidase activity 6.84511694091156 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 6.5973571808298 bayes_pls_golite062009
hydrolase activity 4.47652590304822 bayes_pls_golite062009
threonine-type endopeptidase activity 2.98214579292788 bayes_pls_golite062009
threonine-type peptidase activity 2.98214579292788 bayes_pls_golite062009
catalytic activity 1.19663085909195 bayes_pls_golite062009
binding 0.982918122186083 bayes_pls_golite062009
nucleic acid binding 0.448212653390607 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle