YRC Public Data Repository - Protein Structure Prediction

Protein:	ceh-17
Organism:	Caenorhabditis elegans
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-17.

Description	E-value	Query Range	Subject Range
gi\|157745317 - gi\|157745317\|ref\|XP_001667755.1\| Hypothetical protein CBG22279 [Caenorhabditis briggsae AF16] gi\|187022139, gi... - gi\|39589496\|emb\|CAE74525.1\| Hypothetical protein CBG22279 [Caenorhabditis briggsae], gi\|187022139\|em...	138.0	[0..1]	[224..1]
gi\|18138032 - gi\|18138032\|emb\|CAC80518.1\| paired box protein [Mus musculus]	133.0	[0..6]	[234..72]
gi\|2696969 - gi\|2696969\|dbj\|BAA24022.1\| PAX6 LS [Cynops pyrrhogaster]	130.0	[0..6]	[236..89]
gi\|4322076 - gi\|4322076\|gb\|AAD15947.1\| homeobox protein [Danio rerio]	129.0	[0..10]	[209..8]
gi\|5758937 - gi\|5758937\|gb\|AAD50902.1\|AF169413_1 paired-box transcription factor +- isoform [Ambystoma mexicanum]	129.0	[0..6]	[236..70]
gi\|786328 - gi\|786328\|gb\|AAB32671.1\| Pax-6 [Rattus sp.] gi\|480038, gi\|446399 - gi\|480038\|pir\|\|S36166 paired box transcription factor Pax-6 - rat (fragment), gi\|446399\|prf\|\|1911405...	129.0	[0..39]	[227..1]
gi\|109288051 - gi\|109288051\|gb\|ABG29069.1\| transcription factor Pax6 [Pleurodeles waltl]	128.0	[0..6]	[207..4]

Back

Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMEYGGYFS SSAVAQQSGD VPTTAPSAVT NSFFYTPQSH NIYHQYATPY LQSGRALTTA  60
   61 HNTSSSSAGN STSSSSSSSN YRNTTHDSLQ AFFNTGLQY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1tbuA
Description:	Crystal structure of N-terminal domain of yeast peroxisomal thioesterase-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0687089720731064	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [100-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLYQKSQLIG SDTIQRTSSN VLNGLPRSSL VGALCSTGGA PLNPAERRKQ RRIRTTFTSG  60
   61 QLKELERSFC ETHYPDIYTR EEIAMRIDLT EARVQVWFQN RRAKYRKQEK IRRVKDEEED 120
  121 PLKKEPGQIS LEEIIDQI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1b72A
Description:	Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.79395670663085	bayes_pls_golite062009
binding	1.68817361068715	bayes_pls_golite062009
DNA binding	1.35826519730529	bayes_pls_golite062009
nucleic acid binding	1.15920344563067	bayes_pls_golite062009
transcription factor activity	1.03972807552332	bayes_pls_golite062009
protein binding	0.111941607625758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: