| Protein: | nhr-46 |
| Organism: | Caenorhabditis elegans |
| Length: | 528 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-46.
| Description | E-value | Query Range |
Subject Range |
|
|
273.0 | [0..1] | [528..1] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MKSDWSTDFF HQSQTPNPYP PIVQQQQQPP HTSSSFFNTN HQLNSHYSSP IHQPPTSLHQ 60
61 PIPMMQNQFK ASPPQSDQET APTTPGSGS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [90-235] |
1 11 21 31 41 51
| | | | | |
1 GGQMKGERCV GCGSESAIRV HYGASSCHGC KAFFRRSVFE GRVYMCSADN HCDITNESRN 60
61 RCRACRLRNC LEGGMNPKHV REERSKIERM PGNTCTVSAA NGVSHSSSAA SASPEHKFSF 120
121 SLSTIAPSTS TGSFSSGSQP APIEST
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 0.270879137859077 | bayes_pls_golite062009 |
|
Region A: Residues: [236-528] |
1 11 21 31 41 51
| | | | | |
1 NSSGSEAEVL DRKLIQENQL TLFMVALEKQ TEQLTDDDVK DNDVMGAWSR DITLTFGLQH 60
61 PQMVIKRLPL KYSCDRIMEA ADLYLSWYRS FVFAADWAMG IPEFRVLPLA DQTTLFKQNF 120
121 MAFGWITFAY KCFELKQHLT GMPLGNGAYI PYNDEDQKKL PERWAQTYGV VCRKLIDLIV 180
181 KAMIELQITE EEYCLIKTIS LFQQDCILSE AGQGICSRMR DRLLDALSAH IEKRYPYHTT 240
241 SQRMTRALKI SLMLPSFSHI GQVESTLITQ LTAADLHQLS GVPMEICTAQ TTL
|
| Detection Method: | |
| Confidence: | 56.0 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
