YRC Public Data Repository - Protein Structure Prediction

Protein:	fog-3
Organism:	Caenorhabditis elegans
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fog-3.

Description	E-value	Query Range	Subject Range
gi\|14029604 - gi\|14029604\|gb\|AAK52748.1\|AF354170_1 FOG-3 [Caenorhabditis remanei]	372.0	[0..1]	[260..1]
gi\|14029602, gi\|... - gi\|50261743\|gb\|AAT72455.1\| FOG-3 [Caenorhabditis briggsae], gi\|39589753\|emb\|CAE66988.1\| Hypothetical... gi\|157746589 - gi\|157746589\|ref\|XP_001668390.1\| Hypothetical protein CBG12385 [Caenorhabditis briggsae AF16]	364.0	[0..1]	[253..1]
gi\|76617039 - gi\|76617039\|ref\|XP_873792.1\| PREDICTED: similar to Tob2 protein (Transducer of erbB-2 2) isoform 2 [...	317.0	[0..1]	[260..1]
gi\|114686623, gi... - gi\|114686625\|ref\|XP_515158.2\| PREDICTED: similar to KIAA1663 protein isoform 2 [Pan troglodytes], gi...	310.0	[0..1]	[260..1]
gi\|60833826 - gi\|60833826\|gb\|AAX37067.1\| transducer of ERBB2 2 [synthetic construct]	310.0	[0..1]	[260..1]
gi\|1469155 - gi\|1469155\|dbj\|BAA10971.1\| tob family [Homo sapiens]	310.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTEVRELVN FVCRYLFGHI PRRPVGIFGA ELGNYLVSHF SSTWDVHHPK NGEMKRMINT  60
   61 TTSLCFASSA EEAGVPPSDV LRLLPTNMII FANPGHVFVR LSENGIETPI WIGDVNCDEN 120
  121 YQSVPEYVVR TAAIRAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2d5rB
Description:	No description for 2d5rB was found.

Predicted functions:

Term	Confidence	Notes
binding	1.20880869424705	bayes_pls_golite062009
protein binding	0.728368346001023	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [138-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCSNLGAAGK SVLVGKKPLL TNDKAALEMV NTMYSPLARE KCDDINANLS HLREMYPFRF  60
   61 VYKPSSAQTF SGVEFSQTRF GSSKSRPDLQ TMDVIKYLSS QQVSSSSSPS FTYSSINDQM 120
  121 RYSPRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.968
Match:	1qbeA
Description:	Qbeta coat protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: