| Protein: | ceh-10 |
| Organism: | Caenorhabditis elegans |
| Length: | 344 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-10.
| Description | E-value | Query Range |
Subject Range |
|
|
139.0 | [0..36] | [229..10] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MAVDEMQLAA SMQMSNQMSN SQRMSFAIHE ILGIQGNAYL SHGYCPQGTF LSNQPNFMDI 60
61 GSCGVSGFDR QLCGTDSIGN APAPLMYRMP ISTSEVITSE PQTHVSSSSI LSSATTSNSS 120
121
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [121-206] |
1 11 21 31 41 51
| | | | | |
1 GGGSSGGGGK ASKRKKRRHR TIFTQYQIDE LEKAFQDSHY PDIYAREVLA GKTELQEDRI 60
61 QVWFQNRRAK WRKTEKTWGK STIMAE
|
| Detection Method: | |
| Confidence: | 25.154902 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.5139760613123 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| transcription activator activity | 3.10621734076555 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.869448556410126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
|
Region A: Residues: [207-344] |
1 11 21 31 41 51
| | | | | |
1 YGLYGAMVRH SLPLPETITK SAEAADPQQS AAPWLLGMHK KSMEAAAHLE SVEKCDMSDS 60
61 DDDDRPVTPP VQRQVKNEYK PRIIEHVQQQ APQHQSSLNF DTSLVVSSSL SQLHFQDSQM 120
121 IPNNNASLKL YHDYNNPM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
