YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07113
Organism:	Caenorhabditis elegans
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07113.

Description	E-value	Query Range	Subject Range
gi\|88943485 - gi\|88943485\|ref\|XP_497711.2\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]	214.0	[0..2]	[117..60]
gi\|76612880 - gi\|76612880\|ref\|XP_871849.1\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Bos taurus]	207.0	[0..2]	[117..222]
gi\|50729226 - gi\|50729226\|ref\|XP_425464.1\| PREDICTED: similar to histone protein Hist2h3c1 [Gallus gallus]	206.0	[0..2]	[117..79]
gi\|116057937 - gi\|116057937\|emb\|CAL54140.1\| Histones H3 and H4 (ISS) [Ostreococcus tauri]	204.0	[0..2]	[117..46]
gi\|74003971, gi\|... - gi\|74003975\|ref\|XP_859248.1\| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis fami...	204.0	[0..2]	[117..16]
gi\|148706930, gi... - gi\|62739244\|gb\|AAH94041.1\| Histone cluster 2, H3c1 [Mus musculus], gi\|30061401\|ref\|NP_835734.1\| hist...	201.0	[0..2]	[117..61]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKNLSGV CRKSCTQPVR SYPFHSGTVA LREIRKQQQS TELLIPRSRF ERLVKELAQD  60
   61 FVTDLIFRKD AIDALQAAVE DYLVELFRLG NLCAIKCKRV TIEADNLKFA RRIRGEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	2io5B
Description:	No description for 2io5B was found.

Predicted functions:

Term	Confidence	Notes
binding	1.73700145395396	bayes_pls_golite062009
DNA binding	1.04127970884713	bayes_pls_golite062009
nucleic acid binding	0.86554830065808	bayes_pls_golite062009
transcription regulator activity	0.57702121108343	bayes_pls_golite062009
protein binding	0.260428734715028	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: