YRC Public Data Repository - Protein Structure Prediction

Protein:	lys-8
Organism:	Caenorhabditis elegans
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys-8.

Description	E-value	Query Range	Subject Range
gi\|187037404, gi... - gi\|39596917\|emb\|CAE59144.1\| Hypothetical protein CBG02448 [Caenorhabditis briggsae], gi\|187037404\|em... gi\|157752066 - gi\|157752066\|ref\|XP_001679745.1\| Hypothetical protein CBG02448 [Caenorhabditis briggsae AF16]	259.0	[0..1]	[282..1]
lys-7 - status:Confirmed UniProt:O16202 protein_id:AAB65267.1	258.0	[0..1]	[285..1]
gi\|110634375, gi... - gi\|69275311\|ref\|ZP_00611223.1\| Glycoside hydrolase, family 25 [Mesorhizobium sp. BNC1], gi\|68193751\|...	220.0	[0..1]	[279..1]
gi\|62290340, gi\|... - gi\|62290340\|ref\|YP_222133.1\| glycosy hydrolase family protein [Brucella abortus bv. 1 str. 9-941], g...	213.0	[0..5]	[276..9]
gi\|82700263 - gi\|82700263\|ref\|YP_414837.1\| glycoside hydrolase family protein [Brucella melitensis biovar Abortus ... gi\|82616364 - gi\|82616364\|emb\|CAJ11421.1\| Glycoside hydrolase, family 25 [Brucella melitensis biovar Abortus 2308] gi\|237789143, gi... - gi\|237815845\|ref\|ZP_04594842.1\| glycosyl hydrolase, family 25 [Brucella abortus str. 2308 A], gi\|237... gi\|225627894, gi... - gi\|225627894\|ref\|ZP_03785930.1\| glycosyl hydrolase, family 25 [Brucella ceti str. Cudo], gi\|22561705... gi\|254697781 - gi\|254697781\|ref\|ZP_05159609.1\| Glycoside hydrolase, family 25 [Brucella abortus bv. 2 str. 86/8/59] gi\|254689639 - gi\|254689639\|ref\|ZP_05152893.1\| Glycoside hydrolase, family 25 [Brucella abortus bv. 6 str. 870] gi\|163843701, gi... - gi\|163843701\|ref\|YP_001628105.1\| glycosy hydrolase family protein [Brucella suis ATCC 23445], gi\|163... gi\|254710486 - gi\|254710486\|ref\|ZP_05172297.1\| Glycoside hydrolase, family 25 [Brucella pinnipedialis B2/94] gi\|161336205, gi... - gi\|161619394\|ref\|YP_001593281.1\| glycosy hydrolase family protein [Brucella canis ATCC 23365], gi\|16... gi\|254704703 - gi\|254704703\|ref\|ZP_05166531.1\| Glycoside hydrolase, family 25 [Brucella suis bv. 3 str. 686] gi\|254717377 - gi\|254717377\|ref\|ZP_05179188.1\| Glycoside hydrolase, family 25 [Brucella ceti M13/05/1] gi\|23502318, gi\|... - gi\|23502318\|ref\|NP_698445.1\| glycosy hydrolase family protein [Brucella suis 1330], gi\|23348296\|gb\|A... gi\|254714479 - gi\|254714479\|ref\|ZP_05176290.1\| Glycoside hydrolase, family 25 [Brucella ceti M644/93/1] gi\|254730670 - gi\|254730670\|ref\|ZP_05189248.1\| Glycoside hydrolase, family 25 [Brucella abortus bv. 4 str. 292] gi\|189024571, gi... - gi\|189024571\|ref\|YP_001935339.1\| Glycoside hydrolase, family 25 [Brucella abortus S19], gi\|189020143...	213.0	[0..5]	[276..9]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKSVALLS VLAVLCHSAS VSVKVLPFVD SSLPVKFREV IAEAAPRVPP NLASYAFAVD  60
   61 LSVPVSLSQL QCLKQAGYSA VFVRAYNPAG QGSFDTNSCN TIQNAYNAGL GTEIYMTPQP 120
  121 ASSKQGYQQL DEIYQGLTAR GITIRSVWIQ VTSPTNWPSN ANNNVNFINS IVSRARQYGM 180
  181 TVGIYTSYYD WNQITNGWSS IGNDVLLWYW NVLGGGVNGE TPASFADFRA FGCWTTPSVK 240
  241 QFAQVEQVCQ FTVNRDVYAA GTMLKAADAV EEDGKIYAGG FIQGSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1jfxA
Description:	Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	0.279839460874635	bayes_pls_golite062009
hydrolase activity	0.220893158135492	bayes_pls_golite062009
catalytic activity	0.191302991685802	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.0804992363272641	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: