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View Structure Prediction Details

Protein: amt-1
Organism: Caenorhabditis elegans
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amt-1.

Description E-value Query
Range		 Subject
Range
gi|39597922, gi|... - gi|39597922|emb|CAE68614.1| Hypothetical protein CBG14495 [Caenorhabditis briggsae], gi|187027927|em...
gi|157769543 - gi|157769543|ref|XP_001676592.1| Hypothetical protein CBG14495 [Caenorhabditis briggsae AF16]
 453.0 [0..1] [534..1]

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Predicted Domain #1
Region A:
Residues: [1-454] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTNFTTE IDKLHAEITR LETGFYENVN SFFLCSMALI IFFMQCGFAY LEAGAVRSKN  60
   61 TTNILIKNLL DSCICIIGYW AIGWALAYGD SGEGVNLFVG HSQFFLSGFS DYPRFFFQYV 120
  121 FSATAATIVS GAVAERCEFI TYVTYCTVIS TFIYPVLTHW GWTENGWMAK GITSGIIDTK 180
  181 YDDFAGSGLV HLCGGSISFL AAWIMGPRIG KFPDDEDDES DEILGHSVPF TALGGFILMF 240
  241 GFLAFNGGSV ASISHAGDGH TVALAMINTI LSGAFAALIY LGVHYYQHGK WTLLLTINAC 300
  301 LSGMVAACAG CNKMEPWACI WVGLGAGLIY LAFSKLMIRL KIDDPLDAFA VHAGGGFWGL 360
  361 MSSSIISHGG VAYALADAVS GAKNSGDHLT QAFAQLGWQM ICALAIIAWS LGVMLPIFWI 420
  421 LKKTGKLRVS EEVEINGLDV FKHGEMAYPL RAYG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.522879
Match: 2ns1A
Description: No description for 2ns1A was found.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
methylammonium transmembrane transporter activity 7.38326654060024 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 3.56825523857899 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [455-534] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGWHDFERAN KIQAFSAKIT VGEGKNTRIM KIHPEMSIEQ LASVYDRSGN IIPMPKKSRT  60
   61 LFTNSAERKM SQMMYDENKM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle