YRC Public Data Repository - Protein Structure Prediction

Protein:	lys-5
Organism:	Caenorhabditis elegans
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys-5.

Description	E-value	Query Range	Subject Range
lys-4 - status:Confirmed UniProt:Q20964 protein_id:CAA97797.1	223.0	[0..4]	[215..3]
gi\|157755805 - gi\|157755805\|ref\|XP_001670246.1\| Hypothetical protein CBG06112 [Caenorhabditis briggsae AF16] gi\|39593795, gi\|... - gi\|39593795\|emb\|CAE62088.1\| Hypothetical protein CBG06112 [Caenorhabditis briggsae], gi\|187034449\|em...	210.0	[0..20]	[215..19]
LYSG2_DICDI - Probable GH family 25 lysozyme 2 OS=Dictyostelium discoideum GN=DDB_G0274181 PE=3 SV=1 gi\|66821683, gi\|... - gi\|66821683\|ref\|XP_644284.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60472030\|gb\|EAL...	192.0	[0..3]	[215..5]
gi\|110632992, gi... - gi\|110632992\|ref\|YP_673200.1\| glycoside hydrolase family protein [Mesorhizobium sp. BNC1], gi\|110283...	189.0	[0..15]	[214..125]
gi\|23500234, gi\|... - gi\|23500234\|ref\|NP_699674.1\| glycosy hydrolase family protein [Brucella suis 1330], gi\|23463839\|gb\|A...	184.0	[0..18]	[214..123]
gi\|25503473 - pir\|\|F95925 probable cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein (EC... gi\|15140555, gi\|... - gi\|16264418\|ref\|NP_437210.1\| putative cell-wall lytic enzyme, muramidase (lysozyme) protein [Sinorhi...	184.0	[0..18]	[214..130]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFFITILL FCSVVSAARN GIDINSPVST STFTCIKNAG FSFIIPRIYH SSGSVDTVGV  60
   61 QNVKNARAAG LTDVDGYIFP CLKSTCASAA NQVKASLDAV KAAGTKISTL WLDIERLNWP 120
  121 ADHASNRAFI EAMVSEAKAY GQQVGIYSNY YNWQDIVGLD YHGQSSLMLW WPAYDGVKDF 180
  181 SKYAPFGGWS KPTIHQWSDT TTGPCGVSVD MNYIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.154902
Match:	1jfxA
Description:	Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32563207632796	bayes_pls_golite062009
hydrolase activity	0.85514037342026	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.80912338090552	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.41375210927547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: