YRC Public Data Repository - Protein Structure Prediction

Protein:	lys-4
Organism:	Caenorhabditis elegans
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys-4.

Description	E-value	Query Range	Subject Range
lys-6 - status:Confirmed UniProt:Q20968 protein_id:CAA97801.1	228.0	[0..1]	[214..1]
gi\|39593796, gi\|... - gi\|39593796\|emb\|CAE62089.1\| Hypothetical protein CBG06114 [Caenorhabditis briggsae], gi\|187034448\|em... gi\|157755803 - gi\|157755803\|ref\|XP_001670245.1\| Hypothetical protein CBG06114 [Caenorhabditis briggsae AF16]	220.0	[0..1]	[214..1]
gi\|110632992, gi... - gi\|110632992\|ref\|YP_673200.1\| glycoside hydrolase family protein [Mesorhizobium sp. BNC1], gi\|110283...	197.0	[0..8]	[213..119]
gi\|23500234, gi\|... - gi\|23500234\|ref\|NP_699674.1\| glycosy hydrolase family protein [Brucella suis 1330], gi\|23463839\|gb\|A...	193.0	[0..8]	[213..114]
gi\|25503473 - pir\|\|F95925 probable cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein (EC... gi\|15140555, gi\|... - gi\|16264418\|ref\|NP_437210.1\| putative cell-wall lytic enzyme, muramidase (lysozyme) protein [Sinorhi...	193.0	[0..8]	[213..121]
gi\|150031655, gi... - gi\|150377108\|ref\|YP_001313704.1\| glycoside hydrolase family protein [Sinorhizobium medicae WSM419], ...	192.0	[0..8]	[213..118]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFFVSALLL IGAASAARNG IDFIQPVSTA TFQCIHKAGY SFVIPRVFTS VGTLDHTGIQ  60
   61 NVKNARAAGL TDVDGYIFPC LRSNCPSAAN QVKETLDALK SAGTHVSTLW LDIERLAWPA 120
  121 NHASNRAFIE AMVREAQAYK QQVGIYSNYY NWQDIVGLDY HGQSSLMLWW ATYDGIKDFS 180
  181 KFAPFGGWSR PTIHQWEGTT TGPCGVSVDM NYVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1jfxA
Description:	Streptomyces lysozyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32563207632796	bayes_pls_golite062009
hydrolase activity	0.85514037342026	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.80912338090552	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	0.41375210927547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: