| Protein: | hnd-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 226 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hnd-1.
| Description | E-value | Query Range |
Subject Range |
|
|
141.0 | [0..14] | [207..3] |
|
|
131.0 | [0..11] | [170..81] |
|
|
130.0 | [0..11] | [162..90] |
|
|
130.0 | [0..11] | [162..90] |
|
|
129.0 | [0..11] | [162..90] |
|
|
127.0 | [0..11] | [178..71] |
|
|
127.0 | [0..11] | [194..72] |
|
|
126.0 | [0..11] | [162..90] |
|
Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 MVKSTTAGNN AVSSLESTDS KKSRKEKSRE KEHRRAQCIN SAFEILQQHI PYLKSEERKS 60
61 LPKIKTLRLA MQYIDHLKKL LGGNEMLETD CNESRPLTHS DFRVN
|
| Detection Method: |  |
| Confidence: | 13.522879 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04189889011459 | bayes_pls_golite062009 |
| DNA binding | 1.57198412842008 | bayes_pls_golite062009 |
| transcription regulator activity | 1.51367486803231 | bayes_pls_golite062009 |
| transcription factor activity | 1.48896865387791 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33109239768995 | bayes_pls_golite062009 |
| protein binding | 0.90375176425983 | bayes_pls_golite062009 |
|
Region A: Residues: [106-226] |
1 11 21 31 41 51
| | | | | |
1 ISNEIRIRNS YRERAHNQEL DEATVKRILA REDQRRRCSS VPEGIQRYTP YQSRQFGPIS 60
61 NNVCNFRHVD ANQYNTNFME YQTQMVQVAN FPNQFSHEYY NYGTFPVIDP TSLENSNPIL 120
121 Q
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.292 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
