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View Structure Prediction Details

Protein: rhr-2
Organism: Caenorhabditis elegans
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhr-2.

Description E-value Query
Range
Subject
Range
gi|171543915, gi... - gi|171543915|ref|NP_001116374.1| 50 kD glycoprotein [Oryzias latipes], gi|10039355|dbj|BAB13346.1| 5...
353.0 [0..3] [455..17]

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Predicted Domain #1
Region A:
Residues: [1-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSVLHRRQF AIIAGLMQTV FIVLFAKYVK YIDPLDDSRR VYSGTDYPLF QDVHLMIFVG  60
   61 FGFLMAFLKR YGFSAVSVNL LLSAFVIQFA MLLRGFMTVA FQETGLFSIG IPEMISAESS 120
  121 CAAVLITMGV LLGRLTPVQF LLLAFFETGI NVLVEHYVFN YLHVNDSGRS LSVHTFGAYF 180
  181 GLAAACVGHK KNVMEMDEHG GIHHSDLFSM IGTLLLWVFF PSFNAAIQEP EDARHRAIMN 240
  241 TYLAMASGTV TTFMISSCVD TLGRFNMIHI QSSTLAGGVA IGSSANAVLH PYHAVIVGVI 300
  301 AALLSVIGHA WISPRLERTF HLFDTCGVHN LHGMPGILAG LLSIGFAYFY EPESYGKTLY 360
  361 HIYPYWIGGE LHGDRENVSQ AQYQALGLLT ILVTAVIGGL LTGCILKIKV WNQVDDPDFP 420
  421 HGEMNYYAQS DVNFLSKYKH AQEQERLRER EQMQEIY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.0
Match: 2ns1A
Description: No description for 2ns1A was found.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
methylammonium transmembrane transporter activity 4.84543781800962 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 1.02646024539252 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle