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View Structure Prediction Details

Protein: CE04475
Organism: Caenorhabditis elegans
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04475.

Description E-value Query
Range
Subject
Range
gi|39593628, gi|... - gi|39593628|emb|CAE61920.1| Hypothetical protein CBG05916 [Caenorhabditis briggsae], gi|187034618|em...
gi|157756141 - gi|157756141|ref|XP_001670414.1| Hypothetical protein CBG05916 [Caenorhabditis briggsae AF16]
139.0 [0..1] [270..1]
gi|169768066 - gi|169768066|ref|XP_001818504.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83766359 - gi|83766359|dbj|BAE56502.1| unnamed protein product [Aspergillus oryzae]
130.0 [0..3] [161..771]
gi|83753113 - gi|83753113|gb|AAR29046.2| gag-pol polyprotein [Aspergillus flavus]
129.0 [0..3] [159..1839]
gi|50922381, gi|... - gi|50922381|ref|XP_471551.1| OSJNBa0019J05.12 [Oryza sativa (japonica cultivar-group)], gi|38346427|...
129.0 [0..10] [261..1480]
gi|109129375 - gi|109129375|ref|XP_001108466.1| PREDICTED: similar to chromodomain protein, Y-like 2 [Macaca mulatt...
129.0 [0..58] [256..75]
gi|39946572, gi|... - gi|39946572|ref|XP_362823.1| hypothetical protein MG08225.4 [Magnaporthe grisea 70-15], gb|EAA57256....
127.0 [0..14] [214..214]
CDYL2 - chromodomain protein, Y-like 2
127.0 [0..85] [257..5]
gi|32479352 - gi|32479352|gb|AAP83841.1| chromodomain Y-like protein 2 [Macaca fascicularis]
126.0 [0..85] [256..5]
gi|74206467 - gi|74206467|dbj|BAE24934.1| unnamed protein product [Mus musculus]
126.0 [0..85] [265..5]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKTVEGEH GTPKTNFTKK ETSKNHDDFK KIIGHKVVEE HYVEYEVELT SGKTITATEF  60
   61 DFKGDDSLLS TYKKKVTKQS DDSSGEYAVE RVLAHRKVKG SPLYLVQWKG YPHPVWNSEM 120
  121 WEEDLDNCKD LLAAYKKHQE DLKIAQTPKK T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.154902
Match: 1knaA
Description: Heterochromatin protein 1, HP1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.29119158874597 bayes_pls_golite062009
protein binding 0.92128574628879 bayes_pls_golite062009
chromatin binding 0.147288588666239 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [152-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKTPKKTPK SLKRRALTPS DDEEEAGPIA PEPKKTPKQS TKKLKRTTSP ETNLVEKSKK  60
   61 KAIPDLENHT LDQEKNDVIE RVEEIQEDED DDDEQREEVV TTAPVETKSR WGFGSWKWF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle