YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04475
Organism:	Caenorhabditis elegans
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04475.

Description	E-value	Query Range	Subject Range
gi\|39593628, gi\|... - gi\|39593628\|emb\|CAE61920.1\| Hypothetical protein CBG05916 [Caenorhabditis briggsae], gi\|187034618\|em... gi\|157756141 - gi\|157756141\|ref\|XP_001670414.1\| Hypothetical protein CBG05916 [Caenorhabditis briggsae AF16]	139.0	[0..1]	[270..1]
gi\|169768066 - gi\|169768066\|ref\|XP_001818504.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766359 - gi\|83766359\|dbj\|BAE56502.1\| unnamed protein product [Aspergillus oryzae]	130.0	[0..3]	[161..771]
gi\|83753113 - gi\|83753113\|gb\|AAR29046.2\| gag-pol polyprotein [Aspergillus flavus]	129.0	[0..3]	[159..1839]
gi\|50922381, gi\|... - gi\|50922381\|ref\|XP_471551.1\| OSJNBa0019J05.12 [Oryza sativa (japonica cultivar-group)], gi\|38346427\|...	129.0	[0..10]	[261..1480]
gi\|109129375 - gi\|109129375\|ref\|XP_001108466.1\| PREDICTED: similar to chromodomain protein, Y-like 2 [Macaca mulatt...	129.0	[0..58]	[256..75]
gi\|39946572, gi\|... - gi\|39946572\|ref\|XP_362823.1\| hypothetical protein MG08225.4 [Magnaporthe grisea 70-15], gb\|EAA57256....	127.0	[0..14]	[214..214]
CDYL2 - chromodomain protein, Y-like 2	127.0	[0..85]	[257..5]
gi\|32479352 - gi\|32479352\|gb\|AAP83841.1\| chromodomain Y-like protein 2 [Macaca fascicularis]	126.0	[0..85]	[256..5]
gi\|74206467 - gi\|74206467\|dbj\|BAE24934.1\| unnamed protein product [Mus musculus]	126.0	[0..85]	[265..5]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKTVEGEH GTPKTNFTKK ETSKNHDDFK KIIGHKVVEE HYVEYEVELT SGKTITATEF  60
   61 DFKGDDSLLS TYKKKVTKQS DDSSGEYAVE RVLAHRKVKG SPLYLVQWKG YPHPVWNSEM 120
  121 WEEDLDNCKD LLAAYKKHQE DLKIAQTPKK T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	1knaA
Description:	Heterochromatin protein 1, HP1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.29119158874597	bayes_pls_golite062009
protein binding	0.92128574628879	bayes_pls_golite062009
chromatin binding	0.147288588666239	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [152-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKTPKKTPK SLKRRALTPS DDEEEAGPIA PEPKKTPKQS TKKLKRTTSP ETNLVEKSKK  60
   61 KAIPDLENHT LDQEKNDVIE RVEEIQEDED DDDEQREEVV TTAPVETKSR WGFGSWKWF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: