YRC Public Data Repository - Protein Structure Prediction

Protein:	CE04151
Organism:	Caenorhabditis elegans
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04151.

Description	E-value	Query Range	Subject Range
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	178.0	[0..1]	[296..82]
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	177.0	[0..1]	[294..73]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	175.0	[0..1]	[296..219]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	174.0	[0..1]	[296..82]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	173.0	[0..1]	[296..72]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEKKIAQR LKEQGNEAFK KKKYHKAMTI YSKSLEHWPD PIVFSNRAQA GLNADLPLLA  60
   61 QIDCTAALNL DSTAAKAYYR RAQAFKALEL YELAERDMKT CFKYSNDPNM ERQANDLKGK 120
  121 KNVQVIDLPS IERDEYLQSD EKFTKIDFTY NIEKIEEIIV AEEPENDNIV PKYITKLPPH 180
  181 PKDYQDFVGA VNMLKRAQSL LPLAEYFLNI SMDKYSELFD ELLDDVYAVQ IFKALNFHLK 240
  241 TGRTIPHLAA RMMIISELSR FDLLIAFMSE EQKSTITEIL DYMVPEEAAM VSSRYSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.02652482814057	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: