| Protein: | pab-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 566 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pab-2.
| Description | E-value | Query Range |
Subject Range |
|
|
411.0 | [0..48] | [550..2] |
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 MAQVPPPMTQ VVTSAPPPTA AATVVAGAVA GQPQAVIQQG PPPTNIGYPP NATYSMASLY 60
61 IGDLHPDVSE AMLFEKFSMA GPVLSIRVCR DNTSRLSLGY AYVNFQQPAD AERALDTMNF 120
121 EVIHGRPMRI MWSQRDPAAR RAGNGNIFIK NLDRVIDNKS VYDTFSLFGN ILSCKVATDD 180
181 EGNSKGYGFV HFETEHSAQT AIEKVNGMLL SDKKVYVGKF QPRAQRMKEL G
|
| Detection Method: |  |
| Confidence: | 48.09691 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.100880394187931 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.0459458211377304 | bayes_pls_golite062009 |
|
Region A: Residues: [232-331] |
1 11 21 31 41 51
| | | | | |
1 ESGLKYTNVF VKNFGEHLDQ EKLSAMFSKF GEITSAVVMT DAQGKPKGFG FVAFADQDAA 60
61 GQAVEKLNDS ILEGTDCKLS VCRAQKKSER SAELKRKYEA
|
| Detection Method: | |
| Confidence: | 17.0 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
|
Region A: Residues: [332-435] |
1 11 21 31 41 51
| | | | | |
1 LKQERVQRYQ GVNLYVKNIE EDLNDDGLRD HFSSFGTITS AKVMVDENGR SKGFGFVCFE 60
61 KPEEATAAVT DMNSKMIGAK PLYVALAQRK EDRRAQLASQ YMQR
|
| Detection Method: | |
| Confidence: | 5.47 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [436-566] |
1 11 21 31 41 51
| | | | | |
1 LATLRMGQQA SGVPAMTQLY QPGQQGYFVP NPMNAQGRPG FQPQSAQIRG PPGQRVFQNQ 60
61 MFMQYPFNQR QVYPQQQGRP PMRTNDGRPQ YGMAPRPAGA PRVGGPGVQM GGAPIRQNFG 120
121 VFFFFIKNLE T
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
