YRC Public Data Repository - Protein Structure Prediction

Protein:	CE02019
Organism:	Caenorhabditis elegans
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE02019.

Description	E-value	Query Range	Subject Range
gi\|57642053, gi\|... - gi\|57642053\|ref\|YP_184531.1\| molybdopterin converting factor, subunit 1 [Thermococcus kodakarensis K...	102.0	[0..2]	[84..1]
gi\|53797591 - ref\|ZP_00358365.1\| COG1977: Molybdopterin converting factor, small subunit [Chloroflexus aurantiacus... gi\|222449161, gi... - gi\|222525282\|ref\|YP_002569753.1\| molybdopterin converting factor, subunit 1 [Chloroflexus sp. Y-400-... gi\|76261574, gi\|... - gi\|76261574\|ref\|ZP_00769179.1\| Molybdopterin converting factor, subunit 1:MoaD, archaeal [Chloroflex...	100.0	[0..1]	[84..1]
gi\|148657301, gi... - gi\|148657301\|ref\|YP_001277506.1\| molybdopterin converting factor, subunit 1 [Roseiflexus sp. RS-1], ...	99.0	[0..2]	[84..5]
gi\|18976915, gi\|... - gi\|18976915\|ref\|NP_578272.1\| molybdopterin converting factor, subunit 1 [Pyrococcus furiosus DSM 363...	97.0	[0..1]	[84..1]
gi\|18159566, gi\|... - gi\|18312133\|ref\|NP_558800.1\| molybdenum cofactor biosynthesis protein D/E [Pyrobaculum aerophilum st...	97.0	[0..2]	[84..1]
gi\|119769159, gi... - gi\|68545076\|ref\|ZP_00584627.1\| Molybdopterin converting factor, subunit 1 [Shewanella amazonensis SB...	96.0	[0..4]	[84..2]
gi\|171993327, gi... - gi\|172060810\|ref\|YP_001808462.1\| molybdopterin converting factor, subunit 1 [Burkholderia ambifaria ... gi\|171096945, gi... - gi\|171317876\|ref\|ZP_02907053.1\| molybdopterin converting factor, subunit 1 [Burkholderia ambifaria M... gi\|74019145, gi\|... - gi\|74019145\|ref\|ZP_00689763.1\| Molybdopterin converting factor, subunit 1 [Burkholderia ambifaria AM...	95.0	[0..2]	[84..1]
gi\|5458838 - gi\|5458838\|emb\|CAB50325.1\| moaD molybdopterin synthase, small subunit [Pyrococcus abyssi GE5] gi\|7519992, gi\|5... - pir\|\|H75053 molybdopterin converting factor, chain 1 (moad) PAB3357 - Pyrococcus abyssi (strain Orsa...	95.0	[0..2]	[84..1]
gi\|25327567, gi\|... - gi\|25327567\|pir\|\|AC0598 molybdopterin converting factor, chain 1 [imported] - Salmonella enterica su... gi\|29142498, gi\|... - gi\|29142498\|ref\|NP_805840.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. ... gi\|16759729 - gi\|16759729\|ref\|NP_455346.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. ... gi\|56414094, gi\|... - gi\|56414094\|ref\|YP_151169.1\| molybdopterin converting factor, subunit 1 [Salmonella enterica subsp. ... gi\|197094493, gi... - gi\|197363016\|ref\|YP_002142653.1\| molybdopterin synthase small subunit [Salmonella enterica subsp. en...	94.0	[0..1]	[84..1]
gi\|52696120 - gi\|52696120\|pdb\|1VJK\|A Chain A, Putative Molybdopterin Converting Factor, Subunit 1 From Pyrococcus ...	94.0	[0..3]	[84..11]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISIKVLFFG EACQLVGKRE EAIDFPEETD YEEIRKTILE NYPALQKIEK VMMLAVDQEY  60
   61 ANPGDRFELV RFTEIAVIPP LSGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	1vjkA
Description:	Putative molybdopterin converting factor, subunit 1 from Pyrococcus furiosus, Pfu-562899-001
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.978995776708852	bayes_pls_golite062009
protein binding	0.31184203487735	bayes_pls_golite062009
catalytic activity	0.244781231950403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: