YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01976
Organism:	Caenorhabditis elegans
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01976.

Description	E-value	Query Range	Subject Range
ATPE_SOYBN - ATP synthase epsilon chain, chloroplastic OS=Glycine max GN=atpE PE=3 SV=1	154.0	[0..30]	[161..2]
gi\|40746994, gi\|... - gi\|67515991\|ref\|XP_657881.1\| hypothetical protein AN0277.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	154.0	[0..3]	[156..14]
ATPE_JASNU - ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum GN=atpE PE=3 SV=1	154.0	[0..30]	[161..2]
gi\|110456644 - gi\|110456644\|gb\|ABG74763.1\| ATPase epsilon subunit [Jasminum leratii]	153.0	[0..30]	[161..2]
ATPE_MORIN - ATP synthase epsilon chain, chloroplastic OS=Morus indica GN=atpE PE=3 SV=1	152.0	[0..30]	[160..2]
gi\|110456681 - gi\|110456681\|gb\|ABG74790.1\| ATPase epsilon subunit [Jasminum abyssinicum]	152.0	[0..30]	[161..2]
gi\|110456745 - gi\|110456745\|gb\|ABG74840.1\| ATPase epsilon subunit [Menodora longiflora]	152.0	[0..30]	[161..2]
ATPE_CALFG - ATP synthase epsilon chain, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpE PE=3 SV=1	152.0	[0..30]	[161..2]
gi\|110456713 - gi\|110456713\|gb\|ABG74816.1\| ATPase epsilon subunit [Jasminum subhumile]	152.0	[0..30]	[161..2]
gi\|22797513 - gi\|22797513\|emb\|CAD23919.1\| ATP synthase epsilon subunit [Pterostyrax hispidus]	151.0	[0..30]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARTIQRFS VVAKRGYAAA APAANANPEE LRLTFASPDT AVFSNAVVKQ VDVPTLAGMV  60
   61 GVLANHVPTI GVLKPGVVSV TTNEGTVQRL FVSSGTLSVN IDGSCQVLAE EVLKVEEIDE 120
  121 SAARAELDAA QRASGEGSEV ARAEAQIRAE VAEALIKAAT NQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2v7qH
Description:	No description for 2v7qH was found.

Predicted functions:

Term	Confidence	Notes
binding	0.274114086966539	bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism	0.230548023779984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: