YRC Public Data Repository - Protein Structure Prediction

Protein:	clk-1
Organism:	Caenorhabditis elegans
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clk-1.

Description	E-value	Query Range	Subject Range
COQ7_MOUSE - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Mus musculus GN=Coq7 PE=1 SV=3	290.0	[0..1]	[186..31]
gi\|109127736 - gi\|109127736\|ref\|XP_001083388.1\| PREDICTED: similar to COQ7 protein [Macaca mulatta]	286.0	[0..1]	[187..31]
gi\|71297300 - gi\|71297300\|gb\|AAH43272.1\| COQ7 protein [Homo sapiens]	285.0	[0..2]	[187..9]
gi\|114661284, gi... - gi\|114661288\|ref\|XP_001153055.1\| PREDICTED: COQ7 protein isoform 6 [Pan troglodytes], gi\|114661286\|r...	285.0	[0..2]	[187..32]
COQ7_BOVIN - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Bos taurus GN=COQ7 PE=2 SV=1	281.0	[0..2]	[187..32]
gi\|73958985 - gi\|73958985\|ref\|XP_536955.2\| PREDICTED: similar to Ubiquinone biosynthesis protein COQ7 homolog (Coe...	279.0	[0..2]	[186..32]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVITRGAH TAASRQALIE KIIRVDHAGE LGADRIYAGQ LAVLQGSSVG SVIKKMWDEE  60
   61 KEHLDTMERL AAKHNVPHTV FSPVFSVAAY ALGVGSALLG KEGAMACTIA VEELIGQHYN 120
  121 DQLKELLADD PETHKELLKI LTRLRDEELH HHDTGVEHDG MKAPAYSALK WIIQTGCKGA 180
  181 IAIAEKI

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Detection Method:	FFAS03
Confidence:	3.5
Match:	2fzfA
Description:	Hypothetical Protein Pfu-1136390-001 From Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.54239919926847	bayes_pls_golite062009
binding	2.15097517783454	bayes_pls_golite062009
nucleic acid binding	0.289249271377329	bayes_pls_golite062009
protein binding	0.222916509072005	bayes_pls_golite062009
catalytic activity	0.219299244701657	bayes_pls_golite062009
DNA binding	0.160477208079303	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: