YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01335
Organism:	Caenorhabditis elegans
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01335.

Description	E-value	Query Range	Subject Range
gi\|125531706 - gi\|125531706\|gb\|EAY78271.1\| hypothetical protein OsI_33318 [Oryza sativa Indica Group] gi\|31431696, gi\|... - gi\|37533692\|ref\|NP_921148.1\| putative pyridoxamine 5-phosphate oxidase [Oryza sativa (japonica culti...	327.0	[0..2]	[253..227]
PPOX1_ARATH - Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 ...	311.0	[0..2]	[253..284]
gi\|37677308, gi\|... - gi\|37677308\|ref\|NP_937704.1\| pyridoxamine 5'-phosphate oxidase [Vibrio vulnificus YJ016], gi\|3720185...	305.0	[0..17]	[253..19]
gi\|34784069 - gi\|34784069\|gb\|AAH57246.1\| Pnpo protein [Danio rerio]	301.0	[0..2]	[253..9]
PDXH_VIBVU - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio vulnificus (strain CMCP6) GN=pdxH PE=3 SV=1 PDXH_VIBVU - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio vulnificus GN=pdxH PE=3 SV=1 PDXH_VIBVY - Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio vulnificus (strain YJ016) GN=pdxH PE=3 SV=2	293.0	[0..33]	[253..1]
gi\|106770932, gi... - gi\|148654599\|ref\|YP_001274804.1\| pyridoxamine 5'-phosphate oxidase [Roseiflexus sp. RS-1], gi\|148566...	292.0	[0..33]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVVPRRLSS FLSLVHEYRH LARRSYVMET PSIDIQNIRA KYLNSHDPYL LESKLPTTSP  60
   61 FELFDIWFRN VASQSDLTFE EINAVSLSTV GKDLRPSSRM VLLKAYTPTG FSFYTNYTSR 120
  121 KGNQLEENPN AAMLFYWPKV NRQIRVEGVV EKLPDEMAVA YWNSRPVASR IGSKSSDQSK 180
  181 VVPDREFLES KKVALTELSV REGAQAITKP ESWGGYHLIP RYFEFWQGQS DRLHDRIVFE 240
  241 RDVDVWLLKR LSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.221849
Match:	1nrgA
Description:	Pyridoxine 5'-phoshate oxidase (PNP oxidase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pyridoxamine-phosphate oxidase activity	3.81533880638523	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	1.18444956617957	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009
oxidoreductase activity	0.0268904833845668	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: