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View Structure Prediction Details

Protein: CE01192
Organism: Caenorhabditis elegans
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01192.

Description E-value Query
Range
Subject
Range
ssp-19 - status:Confirmed UniProt:O01829 protein_id:AAB54194.1
135.0 [0..1] [109..1]
gi|157762468 - gi|157762468|ref|XP_001673576.1| Hypothetical protein CBG23425 [Caenorhabditis briggsae AF16]
gi|39592211, gi|... - gi|39592211|emb|CAE75432.1| Hypothetical protein CBG23425 [Caenorhabditis briggsae], gi|187021020|em...
127.0 [0..3] [108..2]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTADPPAC TVPAAGGAST HKLVNAGAEK MIFKIKSSNN NEYRITPVFG FVDPSGSKDI  60
   61 TITRTAGAPK EDKLVVHFAA APADATDAQA AFAAITPAGT ITIPMSATA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1rowA
Description: Structure of SSP-19, an MSP-domain protein like family member in Caenorhabditis elegans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.653234420802729 bayes_pls_golite062009
protein binding 0.170808849690486 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle