YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01129
Organism:	Caenorhabditis elegans
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01129.

Description	E-value	Query Range	Subject Range
gi\|187023980, gi... - gi\|39581009\|emb\|CAE72490.1\| Hypothetical protein CBG19669 [Caenorhabditis briggsae], gi\|187023980\|em... gi\|157758851 - gi\|157758851\|ref\|XP_001671769.1\| Hypothetical protein CBG19669 [Caenorhabditis briggsae AF16]	266.0	[0..1]	[160..1]
gi\|3694661 - gi\|3694661\|gb\|AAC62432.1\| carrier protein-like; similar to Q01888 (PID:g266574) [Homo sapiens]	188.0	[0..5]	[118..2]
gi\|109495698, gi... - ref\|XP_213762.2\| similar to mitochondrial ribosomal protein S17 [Rattus norvegicus], gi\|109495698\|re...	186.0	[0..5]	[118..157]
gi\|114689975 - gi\|114689975\|ref\|XP_001136991.1\| PREDICTED: hypothetical protein [Pan troglodytes]	182.0	[0..5]	[118..2]
ENSPTRT00000035492 - null gi\|109066482 - gi\|109066482\|ref\|XP_001090330.1\| PREDICTED: mitochondrial ribosomal protein S17 [Macaca mulatta]	180.0	[0..5]	[118..2]
RT17_BOVIN - 28S ribosomal protein S17, mitochondrial OS=Bos taurus GN=MRPS17 PE=1 SV=3	178.0	[0..5]	[118..2]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTSVWKTR VGTQILMGKI TDITQIGIDR IPCAQVRCQM NEFNIYLKKY FARSFDFWAL  60
   61 DKTSLGNIGD TVLIKQIDGS SRPKANVSHA VDRVVFKFGN IVDPVTGRKI FNDTFADEID 120
  121 LKKVLVEEVV DKPLEEESML FEERRALQIR RLEQEKEANV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.154902
Match:	1i94Q
Description:	Ribosomal protein S17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.29654818412784	bayes_pls_golite062009
nucleic acid binding	0.80979901173823	bayes_pls_golite062009
DNA binding	0.26780730761955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: