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View Structure Prediction Details

Protein: CE01081
Organism: Caenorhabditis elegans
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01081.

Description E-value Query
Range
Subject
Range
gi|50777724 - gi|50777724|ref|XP_423294.1| PREDICTED: similar to dolichyl-diphosphooligosaccharide-protein glycotr...
615.0 [0..21] [433..652]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWLPGLLLI ASIGFHQSLA DRVLVLGETA AVKDTHSVFL NSVKERGHEL TVRAADDSQL  60
   61 ALFKHGQLIF DHLFILAPGV QVFGGSLSPS EISKFVDAGG NVLVAAGSNI GDALREIAAE 120
  121 HGFEFEEAGT SVIDHHNYDQ TLDSGDHTTL VVGKDQLISA ELIVGNSAKL HPVLFKGIGL 180
  181 VAGKTNNLAL SIVRASGTAY SYDPKAVRAT NPSIAGSRTL LVGGLQSRNN ARIVFTGSSE 240
  241 LFSNTFFSAK TNSVNPSVQG AQSGNADFAT AITRWVMKES GVLRVKTVNH HKKG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.37
Match: 1t0bA
Description: Structure of ThuA-like protein from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.21522719658673 bayes_pls_golite062009
binding 1.10799322720495 bayes_pls_golite062009
nucleic acid binding 1.00678459791194 bayes_pls_golite062009
ligase activity 0.952686615697528 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [295-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETVPPVEGYF ITEDVVYTIE IEELKNGKWV PFQGKDVQLE FVRIDPFVRA TLKNSNGRLS  60
   61 VAFKLPDVLG VFKFLVDYRR VGYTHLYDVQ QVSVRPLWHT QYERFIRSAY PYYASSFSMM 120
  121 AGLVLFSIVY LYHKDTPVKG AKVLDSEKKK N

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.638272
Match: PF03345.5
Description: No description for PF03345.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle