| Protein: | exc-7 |
| Organism: | Caenorhabditis elegans |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for exc-7.
| Description | E-value | Query Range |
Subject Range |
|
|
254.0 | [0..33] | [455..2] |
|
Region A: Residues: [1-207] |
1 11 21 31 41 51
| | | | | |
1 MTMEALLTPN NNNVPTSPVQ TTYTSTQRYC SAPNVDIGES KTNLIINYLP QGMTQEEVRS 60
61 LFTSIGEIES CKLVRDKVTG QSLGYGFVNY VREEDALRAV SSFNGLRLQN KTIKVSYARP 120
121 SNDQIKGSNL YVSGIPKSMT LHELESIFRP FGQIITSRIL SDNVTGLSKG VGFVRFDKKD 180
181 EADVAIKTLN GSIPSGCSEQ ITVKFAN
|
| Detection Method: |  |
| Confidence: | 42.39794 |
| Match: | 1fxlA |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.83802439076672 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.69629099229571 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription repressor activity | 1.06887262556449 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.625848256054783 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.461000905454505 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.43716526938634 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| snRNA binding | 0.249682711188639 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.2202184446161 | bayes_pls_golite062009 |
| structural molecule activity | 0.166336846372115 | bayes_pls_golite062009 |
| translation regulator activity | 0.117211881967154 | bayes_pls_golite062009 |
|
Region A: Residues: [208-365] |
1 11 21 31 41 51
| | | | | |
1 NPASNNPKGL LSDLEAVQQA ATTLVPLSTI LGAPTLRATA GGIGPMHHAP ITSKYRYSPM 60
61 GAITAVSQPT ATLPADYLTT SALLQMSQLN ALAGLNPFAT ATAVPDFTAS LIAHQQQQHA 120
121 VAQQHAAQTA SPPATNGQVA GLAAHAQLSA LSASVAAT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [366-456] |
1 11 21 31 41 51
| | | | | |
1 LPPSDTAGYC LFVYNLSSDT DDTLLWQLFS QFGAIVNVKI LRDLTQQCKG YAFVSMSNYT 60
61 EAYNAMLSLN GTNLAGKTLQ VVFKSSTPYR A
|
| Detection Method: | |
| Confidence: | 23.522879 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
