| Protein: | gbh-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gbh-1.
| Description | E-value | Query Range |
Subject Range |
|
|
322.0 | [0..1] | [421..1] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MLSALLIRNI RNASKLASVA GPNSDRIVNV KWSDGKTGVF PLIWLRDTSP DPSTYTISPA 60
61 MTARKLTMLE FDVEQNARKL WIDEDANCLK IEWESGVLSE FPSEWLKIRN PSDQEARRRR 120
121 RKV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [124-421] |
1 11 21 31 41 51
| | | | | |
1 YLFPEQTWGK AEIEGKLKKF SHEEFMKNEQ VVHDFLQAVC IDGIAVLKGA PQGVRGAVEA 60
61 IGDRIGMIKR THFGLVFEVS LKADASNMAY ASNGGLPFHT DFPSLSHPPQ LQMLHMLQSA 120
121 EEGGHSLFVD GFHVAEQLRV EKPEIFKILT TQSMEYIEEG YDVHEINGKT IRFDYDMCAR 180
181 HKVIRLNDDG KVNKIQFGNA MRSWFYDCEP SKVQDVYRAM KTFTEYCYQP RNMLKFRLED 240
241 GDTVLWANQR LLHTRDGFRN APEKARTLTG CYFDWDIVKS RVRFLRDKLS LEQNQPSA
|
| Detection Method: | |
| Confidence: | 54.69897 |
| Match: | 1gqwA |
| Description: | Taurine/alpha-ketoglutarate dioxygenase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 2.1600632791412 | bayes_pls_golite062009 |
| oxidoreductase activity | 2.14660717798066 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.96457406152694 | bayes_pls_golite062009 |
| binding | 0.997838210709106 | bayes_pls_golite062009 |
| catalytic activity | 0.921320409505 | bayes_pls_golite062009 |
| nucleic acid binding | 0.195303464765705 | bayes_pls_golite062009 |
| DNA binding | 0.119653205743915 | bayes_pls_golite062009 |
| protein binding | 0.0481711987500598 | bayes_pls_golite062009 |
