YRC Public Data Repository - Protein Structure Prediction

Protein:	lgg-3
Organism:	Caenorhabditis elegans
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgg-3.

Description	E-value	Query Range	Subject Range
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	182.0	[0..8]	[118..194]
gi\|114663750 - gi\|114663750\|ref\|XP_511114.2\| PREDICTED: similar to GABARAPL2 protein [Pan troglodytes]	179.0	[0..8]	[118..117]
gi\|109129278 - gi\|109129278\|ref\|XP_001104154.1\| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [M...	178.0	[0..8]	[118..160]
gi\|73587001 - gi\|73587001\|gb\|AAI02903.1\| GABARAPL2 protein [Bos taurus]	176.0	[0..8]	[118..43]
GABARAPL2 - GABA(A) receptor-associated protein-like 2 GBRL2_BOVIN - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1 ENSCJAT00000027704 - null gi\|149699371 - gi\|149699371\|ref\|XP_001501591.1\| PREDICTED: similar to Gamma-aminobutyric acid receptor-associated p... GBRL2_MOUSE - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=1 SV=1 ENSPTRT00000015417 - null tr\|M3W9J5\|M3W9J5... - GABA type A receptor associated protein like 2 OS=Felis catus GN=GABARAPL2 PE=3 SV=1 gi\|73957378 - gi\|73957378\|ref\|XP_536778.2\| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [Canis... gi\|90085046 - gi\|90085046\|dbj\|BAE91264.1\| unnamed protein product [Macaca fascicularis] GBRL2_RAT - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=3 SV... ENSOCUP000000142... - pep:novel chromosome:oryCun2:5:30199237:30210711:1 gene:ENSOCUG00000016600 transcript:ENSOCUT0000001... CCDS10921.1_1 - null gi\|123992850, gi... - gi\|60822710\|gb\|AAX36618.1\| GABA(A) receptor-associated protein-like 2 [synthetic construct], gi\|2089... tr\|G3I4N5\|G3I4N5... - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Cricetulus griseus GN=I79_018418 PE=3 ... ENSMMUT000000080... - null, null	172.0	[0..8]	[118..10]
gi\|156717938, gi... - gi\|156717938\|ref\|NP_001096511.1\| hypothetical protein LOC100125141 [Xenopus (Silurana) tropicalis], ... gi\|147903998, gi... - gi\|77748214\|gb\|AAI06475.1\| MGC131197 protein [Xenopus laevis], gi\|147903998\|ref\|NP_001089750.1\| hypo...	172.0	[0..8]	[118..10]
gi\|60821791 - gi\|60821791\|gb\|AAX36587.1\| GABA(A) receptor-associated protein-like 2 [synthetic construct]	171.0	[0..8]	[118..10]
ATG8C_ORYSJ - Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1 ATG8C_ORYSI - Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2	171.0	[0..8]	[118..11]
gi\|12832696 - gi\|12832696\|dbj\|BAB22217.1\| unnamed protein product [Mus musculus]	171.0	[0..8]	[118..10]
gi\|47221926 - gi\|47221926\|emb\|CAF98938.1\| unnamed protein product [Tetraodon nigroviridis]	171.0	[0..8]	[118..10]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METETATTPT GNTEPTAAAS AEPPKSDKVT VRLRNIADAP VLKNKKMVVN PTDTVASFIL  60
   61 KLRKLLNIQA NNSLFLYIDN TFAPSPDTTF ETLSRCYSVK ITDKEILELQ YSITPAYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1eo6A
Description:	Golgi-associated ATPase enhancer of 16 kD, Gate-16
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0934358341245259	bayes_pls_golite062009
protein binding	0.03789551947602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: