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View Structure Prediction Details

Protein: CE00571
Organism: Caenorhabditis elegans
Length: 322 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00571.

Description E-value Query
Range
Subject
Range
cbp-1 - bromodomain status:Partially_confirmed UniProt:P34545 protein_id:CAA82353.2
281.0 [0..1] [319..393]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALQQDPVK QKLVQQQLVL LLHAHKCSLR DKENNEFAAR NQPLPHTTCR LPHCPTMKEV  60
   61 LIHMTNCNVG RLCHFAHCAS SRQIIAHWKN CSREDCPVCT PLKRARDVPL IFSLPHLAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 1r8uB
Description: NMR structure of CBP TAZ1/CITED2 complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.295152393103135 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [120-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIGTKGNSYG SADGEVVHQI GVSTMSAGRI TNGNISNLPP PNVPVRTKEW HRQVTNDLRN  60
   61 HIVGKLVKAI CPAPEMMNDI RLKDLNAYAR KVEKEVFETA IDRKNYYHLL AEKIYEIQKE 120
  121 LQEKKNSRLN QGAAQSPLDE FARMRIDEGG HQLRTNQETE TNRQNQSQQP LMDINVQLNA 180
  181 AKTEEELELV FAELMKNPQL FHA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 1sb0A
Description: Solution structure of the KIX domain of CBP bound to the transactivation domain of c-Myb
Matching Structure (courtesy of the PDB):

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