YRC Public Data Repository - Protein Structure Prediction

Protein:	cutc-1
Organism:	Caenorhabditis elegans
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cutc-1.

Description	E-value	Query Range	Subject Range
gi\|62901834 - gi\|62901834\|gb\|AAY18868.1\| CGI-32 [synthetic construct]	365.0	[0..11]	[250..38]
gi\|109463988, gi... - gi\|62642320\|ref\|XP_342053.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Rattus n...	363.0	[0..11]	[250..26]
ENSPTRT00000005383 - null CUTC - cutC copper transporter homolog (E. coli)	363.0	[0..11]	[250..27]
gi\|109090222 - gi\|109090222\|ref\|XP_001106529.1\| PREDICTED: cutC copper transporter homolog [Macaca mulatta]	362.0	[0..11]	[250..27]
CUTC_MOUSE - Copper homeostasis protein cutC homolog OS=Mus musculus GN=Cutc PE=1 SV=1	361.0	[0..11]	[250..26]
gi\|73998621 - gi\|73998621\|ref\|XP_534987.2\| PREDICTED: similar to Copper homeostasis protein cutC homolog [Canis fa...	354.0	[0..11]	[250..27]
gi\|157775405 - gi\|157775405\|ref\|XP_001665768.1\| hypothetical protein CBG18146 [Caenorhabditis briggsae AF16] gi\|187025181, gi... - gi\|39591686\|emb\|CAE71264.1\| Hypothetical protein CBG18146 [Caenorhabditis briggsae], gi\|187025181\|em...	337.0	[0..1]	[249..1]
gi\|80477695, gi\|... - gi\|80477695\|gb\|AAI08642.1\| MGC131328 protein [Xenopus laevis], gi\|148238237\|ref\|NP_001090148.1\| hypo...	336.0	[0..5]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETESQKQI KLEICIDNLE SAENAVAGGA DRLEVCSALQ LGGLTPSVGF VSILSYKYPD  60
   61 IPLYCMIRQR AGDFVYNEDE MAANMEDVEW LKKAGATGFV FGALTSAGSL DRTSCQSIIE 120
  121 TARPHPVTFH RAIDVAYDWK TCLEDAIDVG FKAVLTSGQE PSALDGVYII REMQELHKGK 180
  181 IDVLAGCGVN SSNVANLVEW TKCHWYHASA SVAKKNAPLN KVSMGKQDNQ PSRVTSLEEV 240
  241 RMLKATLAPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.39794
Match:	1twdA
Description:	Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
copper ion binding	2.32959091323982	bayes_pls_golite062009
binding	1.75231237460254	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: