YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00100
Organism:	Caenorhabditis elegans
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00100.

Description	E-value	Query Range	Subject Range
gi\|157775379 - gi\|157775379\|ref\|XP_001665755.1\| hypothetical protein CBG18131 [Caenorhabditis briggsae AF16] gi\|39591673, gi\|... - gi\|39591673\|emb\|CAE71251.1\| Hypothetical protein CBG18131 [Caenorhabditis briggsae], gi\|187025168\|em...	211.0	[0..1]	[168..16]
gi\|109505037, gi... - gi\|109505870\|ref\|XP_001054992.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Rattus n...	208.0	[0..9]	[164..109]
MRPL32 - mitochondrial ribosomal protein L32	201.0	[0..9]	[164..37]
RM32_MOUSE - 39S ribosomal protein L32, mitochondrial OS=Mus musculus GN=Mrpl32 PE=1 SV=1	201.0	[0..10]	[164..37]
gi\|114613028 - gi\|114613028\|ref\|XP_528025.2\| PREDICTED: mitochondrial ribosomal protein L32 [Pan troglodytes]	200.0	[0..9]	[164..37]
gi\|109066747 - gi\|109066747\|ref\|XP_001097622.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Macaca m...	200.0	[0..4]	[164..27]
RM32_BOVIN - 39S ribosomal protein L32, mitochondrial OS=Bos taurus GN=MRPL32 PE=2 SV=1	193.0	[0..9]	[164..37]
gi\|57099049 - gi\|57099049\|ref\|XP_533077.1\| PREDICTED: similar to mitochondrial ribosomal protein L32 [Canis famili...	181.0	[0..18]	[164..46]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLMRVFSH RSPPPSFGFA CDVGAHPSST AQNLPMTYGS VREMIDDFSI VFGVPKYRTS  60
   61 KPKKVTRKFS FTRLLQPIDN LVTCPACSNI HPSDTICDAC YAKVHQLTSE IKKKMMQYNP 120
  121 YVGEKQDKEV YVKFRGEPDA PAAVVKGKRV LEIEKERPTW FKKLTLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.12
Match:	1j5aM
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.67761199764219	bayes_pls_golite062009
structural molecule activity	9.13063837111868	bayes_pls_golite062009
binding	1.18744024014108	bayes_pls_golite062009
protein binding	0.241535555470437	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: