YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC188.09c
Organism:	Schizosaccharomyces pombe
Length:	609 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC188.09c.

Description	E-value	Query Range	Subject Range
gi\|157767776 - gi\|157767776\|ref\|XP_001667368.1\| Hypothetical protein CBG01856 [Caenorhabditis briggsae AF16] gi\|187037629, gi... - gi\|39590902\|emb\|CAE58682.1\| Hypothetical protein CBG01856 [Caenorhabditis briggsae], gi\|187037629\|em...	229.0	[0..5]	[596..1166]
SPAPB2C8.01 - glycoprotein YKL1_SCHPO - Putative cell agglutination protein PB2C8.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	204.0	[0..4]	[609..615]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	200.0	[0..6]	[551..145]
gi\|30841440 - gi\|30841440\|gb\|AAP34371.1\| agglutinin-like sequence 9 [Candida albicans]	187.0	[0..5]	[541..580]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	183.0	[0..6]	[524..466]
gi\|780770, gi\|21... - gi\|780770\|gb\|AAB41034.1\| VsaA [Mycoplasma pulmonis], pir\|\|S70795 vsaA protein precursor - Mycoplasma...	183.0	[0..9]	[569..255]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLRFFIFT FFTSIFTVVV SEPPVSAKFA KRVLSATSSS SSTCPEFITI FSEGPSEYIT  60
   61 TIYPSSKSSG RGTTNHSTIY TTINSGTVAS TYTVTLADGD VVVKDIEPTA GTVTTTITSG 120
  121 SHEFTTTLAE ASG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-609]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVPGTVEVVE PLAGTVTTTI HSGSVEYNTT LATASGTVPG TVEVVEPAVG TVTTTIYSGS  60
   61 EEFTTTLASA SGSISGTVEV IEPTAGTVTT TIYSGDQEYT TILAEASGTV PGTVEVIEPA 120
  121 VGTVTTTTYS GSVEYTTTLV PASGSVSGTV EVVEPAVGTV TTTLQSGSQA FTTTVPASGS 180
  181 VSGTVEVVQP TGGTVTNTVY EGSQTITSTL ATASGTVPGT VEVILPGPST IYSGTVATTI 240
  241 TYDVSSTPAS TVVVIPTAVC NGERGLQYAV YNYDISSSKN QFCATSGVTD VSSFTQPAYF 300
  301 GSSDLDQSSP LFTGVLSSSD SVPQWTSSYN LPGYPPDATA MGSTSSACKV IVYQFFFRVP 360
  361 VTDTFSLDVT NVDDVFYGWF GDKAISGWSN TNYDTYAYWH ATNGQTGIAS FSMGSLTADT 420
  421 YVPVRFVVAN GAGKGGFDFS FVDSEGNSYN PTSYAYTATC TESFLPFGQG NGGVDN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.86
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.11008558514596	bayes_pls_golite062009
protein binding	1.81988423101674	bayes_pls_golite062009
receptor binding	0.504195144574225	bayes_pls_golite062009
receptor activity	0.357404862871977	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: