| Protein: | usp107 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 695 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp107.
| Description | E-value | Query Range |
Subject Range |
|
|
209.0 | [0..77] | [547..2410] |
|
|
191.0 | [0..77] | [692..1408] |
|
|
190.0 | [0..52] | [694..274] |
|
|
186.0 | [0..77] | [552..882] |
|
|
182.0 | [0..77] | [553..1517] |
|
Region A: Residues: [1-285] |
1 11 21 31 41 51
| | | | | |
1 MQRQNTQAAG MPMMPQVPMV GNGVPYVVPI QPVFAPLPPD YRSLYKKLYG QGAFLVDNPV 60
61 EASSPYDFSQ PILKFGKLPI KQVLRDNESQ QKDRKNLPRN QKSNEIQEKQ TFQTPSSEKS 120
121 TTERESRPFV PPNSQQMRRM LFIGNIPKEL DDFWMDKILR LSGKLASWRR VADADNSMTS 180
181 FGFAEFESNE QFSRALEALN DFVVPPLYEG GPSTRLSLIT DVENEGLYRE WQTSRYARNK 240
241 QKEINILQQI RFNLERICQD IGNFDVRSRI ERAARQAREK NEKLL
|
| Detection Method: |  |
| Confidence: | 4.16 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| 6.40066880991253 | bayes_pls_golite062009 | |
| RNA binding | 6.32219487559982 | bayes_pls_golite062009 |
| mRNA binding | 4.87640532914983 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.93490468939017 | bayes_pls_golite062009 |
| snRNA binding | 3.77997752511163 | bayes_pls_golite062009 |
| nucleic acid binding | 3.55052626921306 | bayes_pls_golite062009 |
| binding | 2.88749864706998 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.7133834347239 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.55628738360472 | bayes_pls_golite062009 |
| structural molecule activity | 1.30816853575581 | bayes_pls_golite062009 |
| transcription regulator activity | 1.10029555513317 | bayes_pls_golite062009 |
| DNA binding | 0.984725930713243 | bayes_pls_golite062009 |
| protein binding | 0.361619805766015 | bayes_pls_golite062009 |
| transcription factor activity | 0.255891228964936 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.229644510503376 | bayes_pls_golite062009 |
|
Region A: Residues: [286-335] |
1 11 21 31 41 51
| | | | | |
1 QNVKTSEIPI NAADLEGINP ELLPVIEEEI RSFRDQSAMK KREKQRSKDE
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 2dfsA |
| Description: | No description for 2dfsA was found. |
|
Region A: Residues: [336-695] |
1 11 21 31 41 51
| | | | | |
1 YASLYKEYTR KEQEKLRKQN DDLQNLLSKH RISRIPMSTV NAFLRAEDSI PESFSDEQAY 60
61 YEEKRRKDQL EAEEYYARER RWMNREKART AALEREAARE EEERVNNTSF GTYLSEKLAS 120
121 FDDDEEARVS RDEYFVDRAA WIRHRAVARA REEDADALDR KEEERELRTR GEGATVETEN 180
181 YVENGKLVTS EMPQHENGPF KIKIQTKKPA VPSERREFGL PERLLLEEED EEPQGYSPNP 240
241 QKPKPAMEEN DAEKTKRLRS LIEKIPVEAE SLWALPIDWS KVTEDLLKEE MQAFVTKKII 300
301 EYIGIQEDSL ITFTIDHIRQ HKGAEQLVSE LDLALAEDAP EFVSKVYRYL HVLLILRSEA 360
361
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
