YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC146.08c
Organism:	Schizosaccharomyces pombe
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC146.08c.

Description	E-value	Query Range	Subject Range
gi\|32414487, gi\|... - gi\|32414487\|ref\|XP_327723.1\| hypothetical protein [Neurospora crassa], gi\|28926413\|gb\|EAA35388.1\| eu... gi\|85114038 - gi\|85114038\|ref\|XP_964624.1\| eukaryotic translation initiation factor 1A [Neurospora crassa OR74A]	153.0	[0..3]	[122..12]
tif11 - translation initiation factor eIF1A IF1A_SCHPO - Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	153.0	[0..3]	[127..12]
gi\|30584999, gi\|... - gi\|61371489\|gb\|AAX43676.1\| eukaryotic translation initiation factor 1A X-linked [synthetic construct...	152.0	[0..3]	[122..12]
gi\|1794151 - gi\|1794151\|dbj\|BAA19134.1\| translation initiation factor eIF1A [Schizosaccharomyces pombe]	152.0	[0..3]	[127..10]
IF1AY_PANTR - Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3	152.0	[0..3]	[122..12]
gi\|222092845, gi... - gi\|223633892\|ref\|NP_001138651.1\| eukaryotic translation initiation factor 1A, X-linked [Ovis aries],... gi\|81674702 - gi\|81674702\|gb\|AAI09651.1\| Eukaryotic translation initiation factor 1A, X-linked [Bos taurus] gi\|60654937, gi\|... - gi\|60654939\|gb\|AAX32034.1\| eukaryotic translation initiation factor 1A [synthetic construct], gi\|606... ENSCJAT00000010387 - null IF1AX_PONAB - Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3 IF1AX_PONPY - Eukaryotic translation initiation factor 1A, X-chromosomal - Pongo pygmaeus (Orangutan) gi\|49257578, gi\|... - gi\|49257578\|gb\|AAH74155.1\| MGC81905 protein [Xenopus laevis], gi\|46250212\|gb\|AAH68786.1\| MGC81333 pr... gi\|49257921, gi\|... - gi\|89269515\|emb\|CAJ82618.1\| eukaryotic translation initiaion factor 1a [Xenopus tropicalis], gi\|5234... IF1AX_MOUSE - Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3 tr\|M3XFD6\|M3XFD6... - Eukaryotic translation initiation factor 1A, X-linked OS=Felis catus GN=EIF1AX PE=3 SV=1 gi\|109130143 - gi\|109130143\|ref\|XP_001086305.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, ... gi\|74007185 - gi\|74007185\|ref\|XP_854509.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, Y-li... EIF1AX - eukaryotic translation initiation factor 1A, X-linked gi\|27708964, gi\|... - gi\|27708964\|ref\|XP_217622.1\| PREDICTED: similar to eukaryotic translation initiation factor 1A, Y-li...	152.0	[0..3]	[122..12]
gi\|26326773 - gi\|26326773\|dbj\|BAC27130.1\| unnamed protein product [Mus musculus]	152.0	[0..3]	[122..12]
gi\|83320111, gi\|... - gi\|83320111\|ref\|NP_001020500.1\| eukaryotic translation initiation factor 1A, X-linked [Bos taurus], ...	151.0	[0..3]	[122..12]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKYGGQIS FDPPARLEKD QVVAKVVQLK GSALFMVVEN NGQELLVEMP PKYRNKIWVR  60
   61 RNGFVIVDKS EFLEKDNKID GTILYVVQSP LKNWKKQIYW PKEFADESLN QNDSEESSSS 120
  121 EEEYDSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1d7qA
Description:	Translation initiation factor-1a, eIF1a
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.48105739930471	bayes_pls_golite062009
nucleic acid binding	1.28689546979233	bayes_pls_golite062009
DNA binding	0.60226991426331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: