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View Structure Prediction Details

Protein: rsp1
Organism: Schizosaccharomyces pombe
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp1.

Description E-value Query
Range
Subject
Range
mug184 - meiotically upregulated gene Mug184
MU184_SCHPO - Meiotically up-regulated gene 184 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
326.0 [0..1] [484..1]
gi|8886993, gi|1... - gi|8886993|gb|AAF80653.1|AC012190_9 Similar to a dnaJ-like protein from Arabidopsis thaliana gb|Y119...
284.0 [0..7] [390..1]
gi|57340266 - gi|57340266|gb|AAW50121.1| DnaJ-like protein [Brassica juncea]
273.0 [0..7] [390..1]
gi|215740556, gi... - gi|50947725|ref|XP_483390.1| DnaJ protein family-like [Oryza sativa (japonica cultivar-group)], gi|4...
gi|218201477 - gi|218201477|gb|EEC83904.1| hypothetical protein OsI_29937 [Oryza sativa Indica Group]
263.0 [0..7] [392..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTAFHDEF VDYYTILGAE STSSYVEIRQ QYLKLVLRYH PDRNPGREAE VLPQFQLIQK  60
   61 AHEVLKDPKL RELFDQRRLL EAGRPDGVLR FRPKKSGPKN DISTKVASKV SVTMATKFAE 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
Hsp70 protein binding 3.46294021814538 bayes_pls_golite062009
binding 2.0541759325193 bayes_pls_golite062009
protein binding 1.63230390088325 bayes_pls_golite062009
unfolded protein binding 0.4305700213258 bayes_pls_golite062009
heat shock protein binding 0.155856464533709 bayes_pls_golite062009
transporter activity 0.00329162947793138 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [121-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKKQDRENV DSKDNNITNF SLHRSFSASG KMEKNNSFKE VSTSKSYISS GYLHPKTSPI  60
   61 FKKNGYATEN VVDPISSSPR FKGPNYNKFN AKLYLESLRE KRRTYTPLSE ISNGLNSNGV 120
  121 ENSSITKSSP RSSSSSNNER FKDTSEESII FTSPNTPEHP SVYQTDITPE IKLEHSDNNS 180
  181 PSKPEIPFRH PTSKPLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [318-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKPLSRSKSS SLSRNQTRSQ LNDLSAENDS TSNSTEYDDQ LQSILRSLAI EGDDDEVAKV  60
   61 LPKPPSVPTI QAPIPPEAPR NLTNASVDSY LNSFEMYQRR WSSYSIIYTQ YAFQWQIFKN 120
  121 KCFQLDLMNT PGQSRLIDNW KEGSQAIQLF YAYEQMHLRA LEELQSLKES LFASFGI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle