YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC947.09
Organism:	Schizosaccharomyces pombe
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC947.09.

Description	E-value	Query Range	Subject Range
gi\|25309714 - pir\|\|E95867 conserved hypothetical protein [imported] - Sinorhizobium meliloti (strain 1021) magapla... gi\|16263953, gi\|... - gi\|16263953\|ref\|NP_436745.1\| hypothetical protein SM_b20212 [Sinorhizobium meliloti 1021], gi\|151400...	185.0	[0..4]	[261..1]
gi\|82742353, gi\|... - gi\|82742353\|ref\|ZP_00905049.1\| NonF-related protein [Shewanella sp. W3-18-1], gi\|82720311\|gb\|EAP5518... gi\|124545881, gi... - gi\|124545881\|ref\|ZP_01705031.1\| ThiJ/PfpI [Shewanella putrefaciens 200], gi\|124510484\|gb\|EAY54553.1\|...	181.0	[0..4]	[261..1]
gi\|58580720, gi\|... - gi\|58580720\|ref\|YP_199736.1\| NonF-related protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	180.0	[0..1]	[260..22]
gi\|68521144, gi\|... - gi\|68541255\|ref\|ZP_00581001.1\| ThiJ/PfpI [Shewanella baltica OS155], gi\|68521144\|gb\|EAN44642.1\| ThiJ...	179.0	[0..4]	[261..3]
gi\|150376058, gi... - gi\|150376058\|ref\|YP_001312654.1\| ThiJ/PfpI domain-containing protein [Sinorhizobium medicae WSM419],...	179.0	[0..6]	[261..1]
gi\|113908466, gi... - gi\|160873396\|ref\|YP_001552712.1\| ThiJ/PfpI domain-containing protein [Shewanella baltica OS195], gi\|...	179.0	[0..4]	[261..1]
gi\|146291483, gi... - gi\|77816416\|ref\|ZP_00815606.1\| ThiJ/PfpI [Shewanella putrefaciens CN-32], gi\|77808622\|gb\|EAO93051.1\|...	178.0	[0..4]	[261..1]
gi\|85831161, gi\|... - gi\|86142409\|ref\|ZP_01060919.1\| ThiJ/PfpI [Flavobacterium sp. MED217], gi\|85831161\|gb\|EAQ49618.1\| Thi... gi\|85831161, gi\|... - gi\|86142409\|ref\|ZP_01060919.1\| ThiJ/PfpI [Flavobacterium sp. MED217], gi\|85831161\|gb\|EAQ49618.1\| Thi...	178.0	[0..6]	[261..44]
gi\|77458457, gi\|... - gi\|77458457\|ref\|YP_347962.1\| ThiJ/PfpI [Pseudomonas fluorescens Pf0-1], gi\|77382460\|gb\|ABA73973.1\| p...	177.0	[0..6]	[261..1]
gi\|84366592, gi\|... - gi\|84622652\|ref\|YP_450024.1\| NonF-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|84...	176.0	[0..6]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKTRNVLI ACSDYYGPFY KDGENTGAFF LELLHPYLVF RDACFNVDIV TESGKIQFDD  60
   61 HSVAGPAIDK GSKGEEFLSY DDHIASGPEL SKAEKYVLEN KDDMFWRIVQ NSKTADEVNP 120
  121 DKYDIFFVAG GHATLFDFPK ATNLQKLGTS IYENGGVVAA VCHGPTLLPF MKRQTSDGSV 180
  181 SIVCGKDVTA FDRVAEDKSK LMEALKKYNL EVLDDMLNDA GANFIKSPNP FGDFVIADGR 240
  241 LVTGSNPASA TSTAKTALRV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1qvvA
Description:	Crystal structure of the S. cerevisiae YDR533c protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.761311388604334	bayes_pls_golite062009
binding	0.674707430307546	bayes_pls_golite062009
ligase activity	0.314215307503825	bayes_pls_golite062009
hydrolase activity	0.132707384514464	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: