YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC306.07c
Organism:	Schizosaccharomyces pombe
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC306.07c.

Description	E-value	Query Range	Subject Range
gi\|88922312, gi\|... - gi\|88938864\|ref\|ZP_01144316.1\| ribosomal protein L1 [Acidiphilium cryptum JF-5], gi\|88922312\|gb\|EAR4...	239.0	[0..3]	[246..258]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	237.0	[0..5]	[245..2]
RL1_CHLSY - 50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpl... RL1_CHLAA - 50S ribosomal protein L1 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplA...	237.0	[0..3]	[243..1]
RL1_THET2 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=... RL1_THETH - 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 gi\|2120598 - pir\|\|S66577 ribosomal protein L1 - Thermus aquaticus (fragment)	235.0	[0..3]	[245..1]
RL1_DEIRA - 50S ribosomal protein L1 OS=Deinococcus radiodurans GN=rplA PE=1 SV=1 RL1_DEIRA - 50S ribosomal protein L1 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG...	235.0	[0..3]	[241..1]
gi\|116668234, gi... - gi\|211938913\|pdb\|2JL8\|C Chain C, Insights Into Translational Termination From The Structure Of Rf2 B... RL1_THET8 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV...	235.0	[0..3]	[245..1]
RL1_MARMM - 50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10) GN=rplA PE=3 SV=1	232.0	[0..3]	[245..1]
gi\|28373722 - gi\|28373722\|pdb\|1ML5\|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release... RL1_THETH - (P27150) 50S ribosomal protein L1 RL1_THET2 - (Q72GV9) 50S ribosomal protein L1 gi\|66361019\|pdb\|... - Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	232.0	[0..4]	[245..1]
RK1_CYAPA - 50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1	232.0	[0..3]	[254..1]
RL1_GLOVI - 50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1 RL1_GLOVI - 50S ribosomal protein L1 OS=Gloeobacter violaceus (strain PCC 7421) GN=rplA PE=3 SV=1	231.0	[0..3]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITSEKKKN LKSLDKIDIK LLEKTIRALL QHIRSSDKPI EKEKVYIQVN TFQPVEKESL  60
   61 RRPSKVFLPH RIMHVTDACL IVKDSQQTYQ DLVEQQGLDE VITKVLSIPR LKLKYKTIRE 120
  121 KCELRDSHNL FLVDDRVLKY IPLLMGKVFE QKKIKPFPIS VLQKKETLRN QVARCLHSTY 180
  181 LKLSAGTSHT ILCGLATQTN EQLLENITTV LKCLLTNFIP KGWSAIDNVA IKTADSASLP 240
  241 IWTSDTNLAA HKRHIVHIQD ARPLKKSELR AQKRGSSGEG KGNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	1eg0N
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	5.5584586460628	bayes_pls_golite062009
structural molecule activity	5.37298418570526	bayes_pls_golite062009
binding	1.16685426269427	bayes_pls_golite062009
protein binding	0.103931839048358	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: