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View Structure Prediction Details

Protein: xlf1
Organism: Schizosaccharomyces pombe
Length: 203 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for xlf1.

Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWVQLRGHR FHFIQASFDA ESNEAVQVIH ITDLVRVWSC TCSRNQIVNQ AESERCPIDP  60
   61 FQTFETLVDV LAEVLVNVSS ESRIQLRGSN DEGSLKIFCT SKIAKDIFLE WNWTLWLTPP 120
  121 ETIAKMVWFP LINHHLFESE TDTSPGSLMS IIRDQKSLLN DKTWFKEALN ERSSSSNPST 180
  181 PRKRSAFADI ISPKRPRTRY DFV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 1ik9A
Description: XRCC4, N-terminal domain; XRCC4, C-terminal oligomerization domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.62853926989034 bayes_pls_golite062009
DNA binding 1.60352768462984 bayes_pls_golite062009
nucleic acid binding 1.59639378096494 bayes_pls_golite062009
protein C-terminus binding 0.795373170462144 bayes_pls_golite062009
protein binding 0.603915344378852 bayes_pls_golite062009
catalytic activity 0.532570324528821 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle