| Protein: | sfc4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1006 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sfc4.
| Description | E-value | Query Range |
Subject Range |
|
|
421.0 | [0..56] | [1000..34] |
|
|
404.0 | [0..4] | [997..76] |
|
|
404.0 | [0..6] | [1005..589] |
|
|
392.0 | [0..71] | [1005..34] |
|
|
388.0 | [0..4] | [1005..631] |
|
|
379.0 | [0..64] | [1004..28] |
|
|
373.0 | [0..1] | [985..1184] |
|
|
365.0 | [0..6] | [1005..30] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MIQNGGNSYV DSNMNETQND TTDNFDAEMQ DLNGYISEIV DEARNVSEVD AKFLGDTSAL 60
61 QAEGLWSDEE SDYEGSDDES NFSKTAS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [88-479] |
1 11 21 31 41 51
| | | | | |
1 RTEDDIANEE WEENLKAVAG FRKVRKGHKG RGRVSRADML PSVEVQQMLS LANHLFAQEG 60
61 NFDEAQKLAE EIVRIDNNVI AAWKMLGECH RQRGNGRVNI EKCLIAWMAA AHLKPKDHEL 120
121 WFTCAKLSES LEFWDQADYC YNRAVSAKPP NKSELKKYIW NRSVLNKEHG SLKKAAEGFK 180
181 FLLQSSPYNA SILKNLAEIY IKIHAPREIL KQFEIAWKYF YQYPAPPIGN DIFDLPTLNL 240
241 YAELLLLDHQ WSNLIRLINR GVRWFRGRKS ESFWDEFDDD REWDVDERRR EFPNASEEHT 300
301 NKEAYLLPHL FRTKLGIARL KTGELPEAEL HFSVIKNLPP DYAWGMLYDI AKAYMDIERL 360
361 DLALEYFVLI CNHEPAQNIG LWYNMGVCYL EL
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.24290984515946 | bayes_pls_golite062009 |
| transcription regulator activity | 2.36571535004008 | bayes_pls_golite062009 |
| protein binding | 1.83529176977066 | bayes_pls_golite062009 |
| DNA binding | 1.71381351716702 | bayes_pls_golite062009 |
| nucleic acid binding | 1.61516860680687 | bayes_pls_golite062009 |
| transcription factor activity | 1.01338808398786 | bayes_pls_golite062009 |
| transcription factor binding | 0.518146612491969 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30464889749774 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.116119418380222 | bayes_pls_golite062009 |
| transcription activator activity | 0.0593768116971065 | bayes_pls_golite062009 |
|
Region A: Residues: [480-675] |
1 11 21 31 41 51
| | | | | |
1 KEYEHAQQCM EAILIVDNSN TNALIKLAEI NELQDNRDAA LEIVTNIFEQ RRNINELERE 60
61 QSQNEDHEKN VGSQLFVGNQ KVPQDKWEKR ARISRSKEEA RQFTIWKTEE TQRRFHKLDI 120
121 LRQSLKKEEN VSESLNEWLA IASELIDEFV SIKAFFPSEK KARARAGLLT RRTRYASLND 180
181 QLTSMINRLN DSLTRT
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1zbpA |
| Description: | Crystal Structure of the Hypothetical protein VPA1032 from Vibrio parahaemolyticus, Northeast Structural Genomics Target VpR44 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [676-1006] |
1 11 21 31 41 51
| | | | | |
1 KYGDLDLDTI LRTGYFRNVS IDAWYQLFVE FSLRLTKVGS VQQAYDVLTT AMGAILFDQD 60
61 TIKRQNLRWC MLACSMYARD PQGALTPLRW VFTTFQFRQD TYRLFSAVLS QGYECSRAFV 120
121 DSANQKFLLR LIKLMDQLMS NSLVSGAATL VKNDDGLATV PTSYDPVLVL LYGHIMARNR 180
181 SWIPAINYYS RAFAINPDCP ITNLSLGLAY LHRAMQRLSD NRHYQILQGF TFLYRYYDLR 240
241 VNEGLGEKQE ALYNLGKAYH FIGLEHYAVK YYEAVLGLSP MSQGDKMTSS ESTVSTTYDF 300
301 GFEAAYNLRL IYICSGNIKL AFQISSKYLI F
|
| Detection Method: | |
| Confidence: | 22.045757 |
| Match: | 2j9qA |
| Description: | No description for 2j9qA was found. |
