YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl9
Organism:	Schizosaccharomyces pombe
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl9.

Description	E-value	Query Range	Subject Range
gi\|90437056, gi\|... - gi\|90581758\|ref\|ZP_01237542.1\| 50S ribosomal protein L3 [Vibrio angustum S14], gi\|90437056\|gb\|EAS622... gi\|89047583, gi\|... - gi\|89076770\|ref\|ZP_01163043.1\| 50S ribosomal protein L3 [Photobacterium sp. SKA34], gi\|89047583\|gb\|E...	295.0	[0..44]	[253..2]
gi\|89080213, gi\|... - gi\|89095538\|ref\|ZP_01168443.1\| 50S ribosomal protein L3 [Oceanospirillum sp. MED92], gi\|89080213\|gb\|...	295.0	[0..42]	[254..1]
gi\|229516849, gi... - gi\|229516849\|ref\|ZP_04406295.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae RC9], gi\|229345912\|... gi\|229521662, gi... - gi\|229521662\|ref\|ZP_04411080.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae TM 11079-80], gi\|22... gi\|229524577, gi... - gi\|229524577\|ref\|ZP_04413982.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae bv. albensis VL426]... gi\|229335106, gi... - gi\|229527474\|ref\|ZP_04416866.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae 12129(1)], gi\|22933... gi\|229369513, gi... - gi\|229606858\|ref\|YP_002877506.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae MJ-1236], gi\|22936... RL3_VIBCH - 50S ribosomal protein L3 OS=Vibrio cholerae GN=rplC PE=3 SV=1 RL3_VIBCH - 50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN... gi\|254292178, gi... - gi\|254292178\|ref\|ZP_04962948.1\| ribosomal protein L3 [Vibrio cholerae AM-19226], gi\|197750482\|ref\|YP... gi\|153831409, gi... - gi\|153831409\|ref\|ZP_01984076.1\| ribosomal protein L3 [Vibrio cholerae 623-39], gi\|148873110\|gb\|EDL71... gi\|149738687, gi... - gi\|153827414\|ref\|ZP_01980081.1\| ribosomal protein L3 [Vibrio cholerae MZO-2], gi\|149738687\|gb\|EDM530... gi\|153225384, gi... - gi\|153225384\|ref\|ZP_01954740.1\| ribosomal protein L3 [Vibrio cholerae MAK 757], gi\|124117331\|gb\|EAY3... RL3_VIBCM - 50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplC PE=3 SV=1 gi\|229507352, gi... - gi\|229507352\|ref\|ZP_04396857.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae BX 330286], gi\|2293... RL3_VIBC3 - 50S ribosomal protein L3 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O... gi\|229353199, gi... - gi\|229509725\|ref\|ZP_04399206.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae B33], gi\|229353199\|... gi\|75828660, gi\|... - gi\|75828660\|ref\|ZP_00758020.1\| COG0087: Ribosomal protein L3 [Vibrio cholerae MO10], gi\|254851136\|re... gi\|229349396, gi... - gi\|229513519\|ref\|ZP_04402983.1\| LSU ribosomal protein L3p (L3e) [Vibrio cholerae TMA 21], gi\|2293493...	295.0	[0..44]	[253..2]
gi\|90309447, gi\|... - gi\|90409445\|ref\|ZP_01217509.1\| ribosomal protein L3 [Psychromonas sp. CNPT3], gi\|90309447\|gb\|EAS3766...	295.0	[0..42]	[253..1]
RL3_PSEHT - 50S ribosomal protein L3 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplC PE=3 SV=1	295.0	[0..42]	[253..1]
RL3_PHOPR - 50S ribosomal protein L3 OS=Photobacterium profundum (strain SS9) GN=rplC PE=3 SV=1 RL3_PHOPR - 50S ribosomal protein L3 OS=Photobacterium profundum GN=rplC PE=3 SV=1	294.0	[0..44]	[253..2]
gi\|91187418, gi\|... - gi\|91229293\|ref\|ZP_01262910.1\| 50S ribosomal protein L3 [Vibrio alginolyticus 12G01], gi\|91187418\|gb...	294.0	[0..44]	[253..2]
RL3_VIBPA - 50S ribosomal protein L3 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplC PE=... RL3_VIBPA - 50S ribosomal protein L3 OS=Vibrio parahaemolyticus GN=rplC PE=3 SV=1 gi\|153840341, gi... - gi\|153840341\|ref\|ZP_01993008.1\| ribosomal protein L3 [Vibrio parahaemolyticus AQ3810], gi\|149745999\|...	294.0	[0..44]	[253..2]
gi\|90415162, gi\|... - gi\|90415162\|ref\|ZP_01223111.1\| 50S ribosomal protein L3 [Photobacterium profundum 3TCK], gi\|90323709...	294.0	[0..44]	[253..2]
gi\|88860959, gi\|... - gi\|88860959\|ref\|ZP_01135595.1\| 50S ribosomal subunit protein L3 [Pseudoalteromonas tunicata D2], gi\|...	293.0	[0..42]	[253..1]

Back

Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSRFLISPT LIRTFAHHAN LTPRKILHDL PEAAHARKQI PLRPGVILVK KGMTNAWDEK  60
   61 TGMQVPLTIL QFDRVQAIDV RTKEKHGYYA VQVGSGIRKP KSITKAEQGN FFSHNIYPKM 120
  121 HVREFRVRDA SGLVSPGTIF TTDYFKPKQY VDVKGITKGK GFAGVMKRWG FSGGNASHGA 180
  181 SLSHRTPGST GQNTTPSRVL PGRKMAGHMG HRSRTVKNLL VWAVDADLEC ILVKGSIPGP 240
  241 NKSAVYVTDT INRSTSATN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1p85B
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.74976995123472	bayes_pls_golite062009
structural molecule activity	8.17182185344538	bayes_pls_golite062009
peptidyltransferase activity	3.0445946370998	bayes_pls_golite062009
translation initiation factor activity	2.68619850021832	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
nucleic acid binding	1.81199659576461	bayes_pls_golite062009
binding	1.44145316612405	bayes_pls_golite062009
RNA binding	0.798696391797967	bayes_pls_golite062009
protein binding	0.449435758237719	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: