YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2A9.09
Organism:	Schizosaccharomyces pombe
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2A9.09.

Description	E-value	Query Range	Subject Range
gi\|88182169, gi\|... - gi\|88182169\|gb\|EAQ89637.1\| hypothetical protein CHGG_06256 [Chaetomium globosum CBS 148.51], gi\|1161...	177.0	[0..2]	[208..15]
gi\|46124057, gi\|... - gi\|46124057\|ref\|XP_386582.1\| hypothetical protein FG06406.1 [Gibberella zeae PH-1], gi\|42551767\|gb\|E...	173.0	[0..2]	[220..15]
gi\|73975297 - gi\|73975297\|ref\|XP_532378.2\| PREDICTED: similar to phosducin-like 2 [Canis familiaris]	169.0	[0..2]	[230..96]
gi\|220954024, gi... - gi\|220954024\|gb\|ACL89555.1\| viaf-PA [synthetic construct], gi\|220944038\|gb\|ACL84562.1\| viaf-PA [synt... viaf-PA - The gene viral IAP-associated factor is referred to in FlyBase by the symbol Dmel\viaf (CG18593, FBg...	166.0	[0..2]	[226..3]
PDCL3_RAT - Phosducin-like protein 3 OS=Rattus norvegicus GN=Pdcl3 PE=1 SV=1	164.0	[0..2]	[233..3]
gi\|54642044, gi\|... - gi\|54642044\|gb\|EAL30793.1\| GA15005 [Drosophila pseudoobscura pseudoobscura], gi\|125978515\|ref\|XP_001... gi\|125978515\|ref... - GA15005-PA [Drosophila pseudoobscura], GA15005 [Drosophila pseudoobscura pseudoobscura]	163.0	[0..2]	[226..3]
gi\|32408633, gi\|... - gi\|32408633\|ref\|XP_324797.1\| hypothetical protein [Neurospora crassa], gi\|28927570\|gb\|EAA36521.1\| hy... gi\|85074779 - gi\|85074779\|ref\|XP_965757.1\| hypothetical protein NCU00617 [Neurospora crassa OR74A]	163.0	[0..2]	[233..15]
gi\|148224144, gi... - gi\|80476224\|gb\|AAI08451.1\| MGC78962 protein [Xenopus laevis], gi\|50418200\|gb\|AAH77206.1\| MGC78962 pr...	161.0	[0..2]	[233..3]
gi\|9957067 - gi\|9957067\|gb\|AAG09198.1\|AF175204_1 IAP-associated factor Viaf1 [Danio rerio]	160.0	[0..2]	[233..3]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDEDTEWN DILRSKGILP EKEPDVDDVL DDALVDAKQL AHENRLENKD LDELAELEDE  60
   61 EDDEFLQMYR NKRMQEWKDQ MSKAKFGSVY PISKPEYTAE VTDASKEVFV VVHMFQDSLP 120
  121 ACKLLAAILE RLAPMYPQIK FVKIPGKQAV ENYPEAMMPT LLIYGHGDLQ QQILTLATLG 180
  181 GMNTSVVDVA EALVRAGALK DSDIAALKDP QNAEDELGKR DSSVNDDLDD DFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1b9yC
Description:	Phosducin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.618139748326926	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: