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View Structure Prediction Details

Protein: amt3
Organism: Schizosaccharomyces pombe
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amt3.

Description E-value Query
Range
Subject
Range
gi|17221150 - gi|17221150|gb|AAL11032.1| high affinity ammonium transporter [Tuber borchii]
411.0 [0..14] [516..20]
gi|66847348, gi|... - gi|70989735|ref|XP_749717.1| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi|66847348|gb...
410.0 [0..3] [510..22]
gi|67900952, gi|... - gi|67900952|ref|XP_680732.1| hypothetical protein AN7463.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
gi|18693013 - gi|18693013|gb|AAL73117.1| ammonium transporter MEAA [Emericella nidulans]
410.0 [0..22] [510..40]
gi|38101985, gi|... - gi|39974633|ref|XP_368707.1| hypothetical protein MGG_00537 [Magnaporthe grisea 70-15], gb|EAA48879....
408.0 [0..2] [509..6]
gi|111064493 - gi|111064493|gb|EAT85613.1| hypothetical protein SNOG_06962 [Phaeosphaeria nodorum SN15]
403.0 [0..5] [495..13]
gi|114197236, gi... - gi|115491497|ref|XP_001210376.1| ammonium transporter MEP2 [Aspergillus terreus NIH2624], gi|1141972...
403.0 [0..1] [496..1]
gi|83773994 - gi|83773994|dbj|BAE64119.1| unnamed protein product [Aspergillus oryzae]
gi|169781578 - gi|169781578|ref|XP_001825252.1| hypothetical protein [Aspergillus oryzae RIB40]
401.0 [0..1] [494..1]
amt1 - ammonium transporter Amt1
AMT1_SCHPO - Ammonium transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt1 PE=3 SV=1
401.0 [0..1] [515..1]

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Predicted Domain #1
Region A:
Residues: [1-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNEPNALLR RDANSTIATV TELFPNEYSN ADIAYVLLST VVVFTVTPGI ALYYAGMVRK  60
   61 NSALSILTQS FLVTAVVFIQ WYLFGYSLAC SSGSSFYGTL WQGGMNHLWL EPYIPGSTIP 120
  121 AIVYFPFGGL FAVATAQLFA GAMAERGRLI PSLVISFLYI TLVYCPQAYW TWAPNGWLYT 180
  181 LGALDFAGGG PVHISSGFAA LAYSLCLGRR IVVDEPDRPD SIRSTDNADL PSSSQNNCKA 240
  241 NWKRWFGFKS VSWKNSFGRG KIAHNPPHDA GMVYIGVVLI WFAWLCFNSG TLLTVNIRTA 300
  301 YIMTNTLISS SFGALTWAII DYIRYRKFST IGICEGAIAG LVGITPACGF VFPWGAAAGG 360
  361 IVPALVCNFL HDLNEWIGVD ETLRVFNLHG IGGIVGSIVL GVVAHPDVAA SDGATVIDGG 420
  421 WAVHHWKQMG YQFAGFTSVA AWSFVITAII CLLVDLVPGL HIRASFEEEL RGMDFVELEE 480
  481 QLPGQTLESK PMIIYAQEMD EPVTQGSNIK QEKQDEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.09691
Match: 2ns1A
Description: No description for 2ns1A was found.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 10.0624820335928 bayes_pls_golite062009
organic cation transmembrane transporter activity 9.07420898067257 bayes_pls_golite062009
cation transmembrane transporter activity 7.57181833547312 bayes_pls_golite062009
ion transmembrane transporter activity 7.46308808953548 bayes_pls_golite062009
methylammonium transmembrane transporter activity 7.38326654060024 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 7.08971867997216 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 7.03159982829686 bayes_pls_golite062009
transporter activity 5.3870893301235 bayes_pls_golite062009
transmembrane transporter activity 5.3046132351753 bayes_pls_golite062009
substrate-specific transporter activity 5.16067985999244 bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity 3.56825523857899 bayes_pls_golite062009
amine transmembrane transporter activity 2.81164277777293 bayes_pls_golite062009
active transmembrane transporter activity 1.08017669832334 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle