| Protein: | sap62 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 217 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sap62.
| Description | E-value | Query Range |
Subject Range |
|
|
363.0 | [0..1] | [214..1] |
|
|
360.0 | [0..1] | [214..1] |
|
|
357.0 | [0..1] | [215..1] |
|
|
357.0 | [0..1] | [215..1] |
|
|
357.0 | [0..1] | [215..1] |
|
|
357.0 | [0..1] | [215..1] |
|
|
356.0 | [0..1] | [215..1] |
|
|
355.0 | [0..1] | [214..1] |
|
|
355.0 | [0..1] | [214..1] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MDYQNRAGVR FGGGGVAGYQ ETNAARRERL RKLALETIDL SKDPYLMKNH LGTFECRLCL 60
61 TTHANENSYL THTQGKKHQT NLARRQALEN KKSQENAPQV LLGISQSHVQ VKKSVVKIGR 120
121 PGYKVSKIRE AESGKFGLRF QIKY
|
| Detection Method: |  |
| Confidence: | 1.83 |
| Match: | 1zu1A |
| Description: | Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.37529385176635 | bayes_pls_golite062009 |
| DNA binding | 3.3049326844117 | bayes_pls_golite062009 |
| nucleic acid binding | 3.24981360535232 | bayes_pls_golite062009 |
| snRNA binding | 3.16782731106334 | bayes_pls_golite062009 |
| RNA binding | 3.11293528368816 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.86343975521155 | bayes_pls_golite062009 |
| binding | 2.84954567129719 | bayes_pls_golite062009 |
| transcription factor activity | 2.44389510173662 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.57041104288348 | bayes_pls_golite062009 |
| mRNA binding | 1.28525296322454 | bayes_pls_golite062009 |
| transcription activator activity | 1.20323819132961 | bayes_pls_golite062009 |
| protein binding | 0.975412203442928 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.732558534458316 | bayes_pls_golite062009 |
| transcription repressor activity | 0.686318575498149 | bayes_pls_golite062009 |
| chromatin binding | 0.626365497850853 | bayes_pls_golite062009 |
| transcription factor binding | 0.515821187939278 | bayes_pls_golite062009 |
| catalytic activity | 0.263007611601737 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.200483461579207 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.113925660147477 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0855506955761403 | bayes_pls_golite062009 |
|
Region A: Residues: [145-217] |
1 11 21 31 41 51
| | | | | |
1 PDIEVNAKPR YRIMSAYEQR VEAPDRKFQY LVVAAEPYES IAFKIDRAPG KFWSYWDAPT 60
61 YTIQFFYNLT KIS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
