Protein: | clr1 |
Organism: | Schizosaccharomyces pombe |
Length: | 1238 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clr1.
Description | E-value | Query Range |
Subject Range |
|
249.0 | [0..108] | [973..245] |
|
247.0 | [0..108] | [973..720] |
|
246.0 | [0..108] | [973..719] |
|
202.0 | [0..100] | [988..4264] |
Region A: Residues: [1-111] |
1 11 21 31 41 51 | | | | | | 1 MAEPDISSSE TLTELQQLRL LYFFCFYHAA PFNVKTLVHS LIPPGALSYL LSTYDILRPW 60 61 LMALRVREGP VNDISTIVQL YEEIVKTGFF INPPPFESYS QTLVARITTL G |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [112-192] |
1 11 21 31 41 51 | | | | | | 1 RPKLQVQQEA QSEVYQRAST NTQQQVSNVS HGNFKPNSSV NTEPNTSILS NSKYAGIKPF 60 61 DFQSSSQNPG LVCEQKTFYQ H |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [193-293] |
1 11 21 31 41 51 | | | | | | 1 QFRPFSNLPS NKSSPVKHVS PNVKNNSKKT ASSVNSNHSS IPSSITKSNI SSLDVYGSEK 60 61 LISSGSQQPG HGMVQTTSDK VNASASLYDR SPSKKDITSS R |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.849 | 0.039 | chromatin silencing at silent mating-type cassette | a.60.9 | lambda integrase-like, N-terminal domain |
Region A: Residues: [294-352] |
1 11 21 31 41 51 | | | | | | 1 NTSSYNLGSM RNPSTLKNAA HANPFEGLRF QGSSAVLKEG LNSTVKKTFF DNLNSEKVC |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [353-595] |
1 11 21 31 41 51 | | | | | | 1 PSVSPFLTPD NIASSILYST ASFSRSKPDR PRLNLSLELK LMQNELNKGQ LKKQFKGDLR 60 61 NLADWNNLSL VSSKFPSLPI TNLRPDGSFL KHRRFNEEIA YNRQTLEKAI KQLDLSPDKV 120 121 IQLREQNGVA VNGRVCYPTR NKHSEISAQS SSSLGVTKSL ASEVYSSSTV DTISKLNTDK 180 181 DNYLIKSKKE PIQQKSVSSE TTLVKPSSTS SYIDTTNNVL KTNSSFKSSG LTSGPRNEKE 240 241 LLP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [596-701] |
1 11 21 31 41 51 | | | | | | 1 EGIPTSHNNS ETQAQTADVS NIAASADGIY NSDQEKPPEK LDVTKRAFGR EIENSNEKEL 60 61 LTSTFLSPSA ESQVCLAEIK TIRPGLVPKK QFSVDQNNVI SDNTDC |
Detection Method: | |
Confidence: | 1.08 |
Match: | 1v65A |
Description: | Solution structure of the Kruppel-associated box (KRAB) domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
nucleic acid binding | 2.35084112049258 | bayes_pls_golite062009 |
DNA binding | 2.22582111349682 | bayes_pls_golite062009 |
binding | 2.0499154380126 | bayes_pls_golite062009 |
protein binding | 0.477323490762673 | bayes_pls_golite062009 |
Region A: Residues: [702-933] |
1 11 21 31 41 51 | | | | | | 1 SLPKPSNSKL SSISSDGDAS SNRMAVPDKS PFVHAAPNSK ALTKDSFSTH ISVSSLLHSD 60 61 NEISPIDSTR KDYFTSKDSN LQTLKEDASS TKQAKDSGTN DFDKLISGND VSKNNSGEEQ 120 121 SRSALKPLIS GKLSSCESIN LTKDISTVKR KEYFGIESTS SKQPFHDTGS IKIPAKRSFD 180 181 TIDKDFRSSN IPFADKIKED GGDKNVISSI HITTELPKSM PVEVPTNAGA QS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [934-1238] |
1 11 21 31 41 51 | | | | | | 1 DQSNVVDSES LNLRENISTS VADVSLSQAG NEAVLSKKAC KPLVLIDPFE EKVLKAFNML 60 61 SKGYAEYRCQ WEGCLANLHS LENFIKHVLL LHHPKSCSVV KCLWASCDMV LPSEEFEMHL 120 121 RGHLNNIRLN CEVSNCKKCF SNYEDMFKHL QHSHLPFKFT PESFIKIRNG NVKEEARRTR 180 181 NAYTQKSGEV ECFMETCTPI AKPAPANWYP VPPPGFNSSL LSRLTQSNQS KDKIIAALAK 240 241 RNVYKSFAGL YDSKGKNDNT GYDFDSNYAR VGRHGSFILP VSKSVPTPSL LIEGSIVQRK 300 301 NIKIE |
Detection Method: | |
Confidence: | 1.46 |
Match: | 2i13A |
Description: | No description for 2i13A was found. |