YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC895.03c
Organism:	Schizosaccharomyces pombe
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC895.03c.

Description	E-value	Query Range	Subject Range
gi\|7429862 - pir\|\|D71154 hypothetical protein PH0435 - Pyrococcus horikoshii gi\|3256838, gi\|1... - gi\|3256838\|dbj\|BAA29521.1\| 340aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590350\|...	364.0	[0..28]	[403..2]
gi\|18976678, gi\|... - gi\|18976678\|ref\|NP_578035.1\| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638], gi\|188...	363.0	[0..28]	[403..2]
gi\|40738864, gi\|... - gi\|67539818\|ref\|XP_663683.1\| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	356.0	[0..12]	[404..1175]
gi\|7445335, gi\|5... - pir\|\|F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (strain Orsay), gi\|5459014\|emb\|CAB50500... SUA5_PYRAB - Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1	356.0	[0..28]	[403..2]
gi\|20806674 - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB... gi\|20806674, gi\|... - gi\|20806674\|ref\|NP_621845.1\| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB...	355.0	[0..33]	[405..9]
gi\|114806420, gi... - gi\|167038769\|ref\|YP_001661754.1\| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514], g...	355.0	[0..35]	[402..10]
gi\|241902915, gi... - gi\|241902915\|ref\|ZP_04787645.1\| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp... gi\|76588732, gi\|... - gi\|76795964\|ref\|ZP_00778334.1\| Sua5/YciO/YrdC/YwlC [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7...	354.0	[0..35]	[402..10]
gi\|25305355 - pir\|\|C84121 hypothetical protein BH3771 [imported] - Bacillus halodurans (strain C-125) gi\|10176395, gi\|... - gi\|15616333\|ref\|NP_244638.1\| hypothetical protein BH3771 [Bacillus halodurans C-125], gi\|10176395\|db...	351.0	[0..26]	[403..8]
gi\|16415221, gi\|... - pir\|\|AG1767 yeast translation initiation protein homolog lin2685 [imported] - Listeria innocua (stra... gi\|16801746 - gi\|16801746\|ref\|NP_472014.1\| hypothetical protein lin2685 [Listeria innocua Clip11262]	351.0	[0..43]	[402..19]
gi\|163943013, gi... - gi\|89209237\|ref\|ZP_01187684.1\| Sua5/YciO/YrdC/YwlC [Bacillus weihenstephanensis KBAB4], gi\|89152833\|...	350.0	[0..41]	[403..20]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKIQTVDT RLISFEKPSN DSEHPFEHTR VSIPPSETRS ALENAANILR NTDYPVAFPT  60
   61 ETVYGLGADA RRTEAVLSIY KAKNRPADNP LIVHVASLDQ LRRLLLSAYP KAKSEVKNQA 120
  121 HDSEEIIPKV YLPLIKKFWP GPLSILLPVV DEANPPVSPI VTAGQKTFAV RMPQHPVALA 180
  181 LISISDSPLA APSANASTRP SPTLAKHVYN DLQGKIPLIL DGGACGVGVE STVVNGLCDP 240
  241 PVILRPGGIS LEEIQSSGGA WERTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.045757
Match:	1kk9A
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
telomeric DNA binding	2.58217232196133	bayes_pls_golite062009
single-stranded telomeric DNA binding	1.94245361512193	bayes_pls_golite062009
binding	1.44524229223398	bayes_pls_golite062009
nucleic acid binding	1.23250290950095	bayes_pls_golite062009
DNA binding	0.84058090598415	bayes_pls_golite062009
RNA binding	0.63108051002538	bayes_pls_golite062009
catalytic activity	0.343636936190038	bayes_pls_golite062009
protein binding	0.207821310455625	bayes_pls_golite062009
structure-specific DNA binding	0.0989469098854212	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [266-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFVAKKSDME TDFIPQTPGM KYRHYSPTAK VLLFVNYTES DAYGVFEKYL SEQGITKEKQ  60
   61 KIGVLCSKRW NEESFPSHCP FVFLHMGRDG HEITKNLFAQ LRDLDLQGVD FVLVEGVSEE 120
  121 NEGLAIMNRL GKAASVVFEG PSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2yv4A
Description:	No description for 2yv4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: