YRC Public Data Repository - Protein Structure Prediction

Protein:	atg12
Organism:	Schizosaccharomyces pombe
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg12.

Description	E-value	Query Range	Subject Range
gi\|114663750 - gi\|114663750\|ref\|XP_511114.2\| PREDICTED: similar to GABARAPL2 protein [Pan troglodytes]	193.0	[0..12]	[132..101]
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	192.0	[0..18]	[132..184]
gi\|109129278 - gi\|109129278\|ref\|XP_001104154.1\| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [M...	190.0	[0..12]	[132..144]
gi\|73587001 - gi\|73587001\|gb\|AAI02903.1\| GABARAPL2 protein [Bos taurus]	187.0	[0..18]	[132..33]
gi\|156717938, gi... - gi\|156717938\|ref\|NP_001096511.1\| hypothetical protein LOC100125141 [Xenopus (Silurana) tropicalis], ... gi\|147903998, gi... - gi\|77748214\|gb\|AAI06475.1\| MGC131197 protein [Xenopus laevis], gi\|147903998\|ref\|NP_001089750.1\| hypo...	181.0	[0..19]	[132..1]
GABARAPL2 - GABA(A) receptor-associated protein-like 2 GBRL2_BOVIN - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1 ENSCJAT00000027704 - null gi\|149699371 - gi\|149699371\|ref\|XP_001501591.1\| PREDICTED: similar to Gamma-aminobutyric acid receptor-associated p... GBRL2_MOUSE - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=1 SV=1 ENSPTRT00000015417 - null tr\|M3W9J5\|M3W9J5... - GABA type A receptor associated protein like 2 OS=Felis catus GN=GABARAPL2 PE=3 SV=1 gi\|73957378 - gi\|73957378\|ref\|XP_536778.2\| PREDICTED: similar to GABA(A) receptor-associated protein like 2 [Canis... gi\|90085046 - gi\|90085046\|dbj\|BAE91264.1\| unnamed protein product [Macaca fascicularis] GBRL2_RAT - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=3 SV... ENSOCUP000000142... - pep:novel chromosome:oryCun2:5:30199237:30210711:1 gene:ENSOCUG00000016600 transcript:ENSOCUT0000001... CCDS10921.1_1 - null gi\|123992850, gi... - gi\|60822710\|gb\|AAX36618.1\| GABA(A) receptor-associated protein-like 2 [synthetic construct], gi\|2089... tr\|G3I4N5\|G3I4N5... - Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Cricetulus griseus GN=I79_018418 PE=3 ... ENSMMUT000000080... - null, null	181.0	[0..19]	[132..1]
gi\|60821791 - gi\|60821791\|gb\|AAX36587.1\| GABA(A) receptor-associated protein-like 2 [synthetic construct]	181.0	[0..19]	[132..1]
gi\|2072023 - gi\|2072023\|gb\|AAB53650.1\| symbiosis-related protein [Laccaria bicolor]	180.0	[0..15]	[132..8]
gi\|12832696 - gi\|12832696\|dbj\|BAB22217.1\| unnamed protein product [Mus musculus]	180.0	[0..19]	[132..1]
gi\|47221926 - gi\|47221926\|emb\|CAF98938.1\| unnamed protein product [Tetraodon nigroviridis]	178.0	[0..19]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLVDQQEL EKRLATEEDS QNEDIENQLP SIETIINTYR EKENRRVNLR FKAIGRTPLL  60
   61 RKTVFSINAS QRFEKVTRFL KKELGLPMNS SLVLYVNSSF APSPDEIVGN LYDNFAIDSH 120
  121 LLINYCINVA FG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1eo6A
Description:	Golgi-associated ATPase enhancer of 16 kD, Gate-16
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.63877637096497	bayes_pls_golite062009
protein binding	2.0758030814092	bayes_pls_golite062009
cytoskeletal protein binding	0.00343080662821671	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: