YRC Public Data Repository - Protein Structure Prediction

Protein:	usp102
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp102.

Description	E-value	Query Range	Subject Range
gi\|49648291, gi\|... - gi\|50549903\|ref\|XP_502423.1\| hypothetical protein [Yarrowia lipolytica], gi\|49648291\|emb\|CAG80611.1\|...	160.0	[0..15]	[246..153]
gi\|38104685, gi\|... - gi\|39949059\|ref\|XP_363157.1\| hypothetical protein MG08741.4 [Magnaporthe grisea 70-15], gb\|EAA51219....	155.0	[0..8]	[248..122]
gi\|85115744 - gi\|85115744\|ref\|XP_964924.1\| hypothetical protein NCU00768 [Neurospora crassa OR74A] gi\|38636412, gi\|... - gi\|38636412\|emb\|CAE81949.1\| related to polyadenylate-binding protein [Neurospora crassa], gi\|3240893...	154.0	[0..8]	[248..118]
gi\|73974174 - gi\|73974174\|ref\|XP_857615.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ... IPI00909378, tr\|... - Uncharacterized protein OS=Homo sapiens GN=PABPC1 PE=4 SV=1, IPI:IPI00909378.2\|TREMBL:B4DQX0;E7ERJ7\|...	153.0	[0..17]	[248..2]
gi\|92891584 - gi\|92891584\|gb\|ABE90872.1\| RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]	149.0	[0..17]	[249..99]
gi\|42552969, gi\|... - gi\|46122719\|ref\|XP_385913.1\| hypothetical protein FG05737.1 [Gibberella zeae PH-1], gi\|42552969\|gb\|E...	146.0	[0..3]	[248..119]
gi\|83774240 - gi\|83774240\|dbj\|BAE64365.1\| unnamed protein product [Aspergillus oryzae] gi\|169782070 - gi\|169782070\|ref\|XP_001825498.1\| hypothetical protein [Aspergillus oryzae RIB40]	145.0	[0..17]	[248..149]
gi\|159131321 - gi\|159131321\|gb\|EDP56434.1\| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1 [Aspergi... gi\|70995622, gi\|... - gi\|70995622\|ref\|XP_752566.1\| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1 [Asperg...	145.0	[0..13]	[248..168]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPQTNSHQE VQQPSPKETD SQTPSETLYI RNIEEKIRLT MLKRILEHLF GSYGKVIDVQ  60
   61 ARKTLRMRGQ AFVVFDNLEN ASRALKDLQG YPLYGKPMMI QYSKSKSDII V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.30103
Match:	1oiaA
Description:	Splicesomal U1A protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	6.73097473547076	bayes_pls_golite062009
	6.62953239642182	bayes_pls_golite062009
mRNA binding	5.29759606920196	bayes_pls_golite062009
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
U1 snRNA binding	4.22094068431436	bayes_pls_golite062009
snRNA binding	4.06596327298973	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
poly-pyrimidine tract binding	3.11990160533699	bayes_pls_golite062009
single-stranded RNA binding	2.93798024346416	bayes_pls_golite062009
transcription regulator activity	1.92450390013691	bayes_pls_golite062009
DNA binding	1.8021593476478	bayes_pls_golite062009
structural molecule activity	1.29928829870122	bayes_pls_golite062009
transcription factor activity	1.15127506309683	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [112-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRESPEEIET RKKDRKNRRE MLKRTSALQP AAPKPTHKKP VPKRNVGAER KSTINEDLLP  60
   61 PNKVLLLQNI PQEVNADVLT QIFEAFSGFQ EVRMVPGRRG IAFVEYDSDR EATVAKNGTT 120
  121 GMSLSGNQIK VTFARKAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	2u1aA
Description:	RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	6.73097473547076	bayes_pls_golite062009
	6.62953239642182	bayes_pls_golite062009
mRNA binding	5.29759606920196	bayes_pls_golite062009
nucleic acid binding	4.92126426323641	bayes_pls_golite062009
U1 snRNA binding	4.22094068431436	bayes_pls_golite062009
snRNA binding	4.06596327298973	bayes_pls_golite062009
binding	3.64400841800969	bayes_pls_golite062009
poly-pyrimidine tract binding	3.11990160533699	bayes_pls_golite062009
single-stranded RNA binding	2.93798024346416	bayes_pls_golite062009
transcription regulator activity	1.92450390013691	bayes_pls_golite062009
DNA binding	1.8021593476478	bayes_pls_golite062009
structural molecule activity	1.29928829870122	bayes_pls_golite062009
transcription factor activity	1.15127506309683	bayes_pls_golite062009
protein binding	1.12215421354121	bayes_pls_golite062009
mRNA 3'-UTR binding	0.591700155096213	bayes_pls_golite062009
sequence-specific DNA binding	0.383589644462932	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: