YRC Public Data Repository - Protein Structure Prediction

Protein:	ynd1
Organism:	Schizosaccharomyces pombe
Length:	572 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ynd1.

Description	E-value	Query Range	Subject Range
YND1 - Apyrase with wide substrate specificity, involved in preventing the inhibition of glycosylation by h... YND1_YEAST - Golgi apyrase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YND1 PE=1 SV=1 gi\|190405565 - gi\|190405565\|gb\|EDV08832.1\| golgi apyrase [Saccharomyces cerevisiae RM11-1a]	542.0	[0..4]	[540..9]
gi\|145019541, gi... - gi\|39971523\|ref\|XP_367152.1\| hypothetical protein MGG_07077 [Magnaporthe grisea 70-15], gb\|EAA56722....	492.0	[0..4]	[511..6]
gi\|114619380 - gi\|114619380\|ref\|XP_519659.2\| PREDICTED: ectonucleoside triphosphate diphosphohydrolase 4 [Pan trogl...	484.0	[0..3]	[471..189]
gi\|2280488 - gi\|2280488\|dbj\|BAA21575.1\| KIAA0392 [Homo sapiens]	483.0	[0..3]	[471..29]
gi\|109086033 - gi\|109086033\|ref\|XP_001108472.1\| PREDICTED: ectonucleoside triphosphate diphosphohydrolase 4 [Macaca...	483.0	[0..3]	[471..207]
gi\|62661681, gi\|... - gi\|62661681\|ref\|XP_341347.2\| PREDICTED: similar to ectonucleoside triphosphate diphosphohydrolase 4 ...	482.0	[0..3]	[471..87]
gi\|13905252 - gi\|13905252\|gb\|AAH06924.1\| Entpd4 protein [Mus musculus]	480.0	[0..3]	[471..83]
gi\|42550753, gi\|... - gi\|46116856\|ref\|XP_384446.1\| hypothetical protein FG04270.1 [Gibberella zeae PH-1], gi\|42550753\|gb\|E...	480.0	[0..2]	[522..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRKYGIFID AGSSGSRLLI YSWDYDTDSS LSDKVKKLPL IETGIGDGGK WSLKVQPGIS  60
   61 SFANNPKHVG KKHLKELLDF AAHAIPKDVH KETPVFLSAT AGMRLLGVDA QNKILSHACR 120
  121 YIKKNYDFDI PNCSNSIRVI DGKAEGMYGW LATNYLLKTL EEKDTSTVGF LDMGGASVQI 180
  181 AFELPPSQLK NYKDSISTVH IGLQNGQQLE YPLFVTTWLG FGANEAYRRY LGLLIES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2j4rA
Description:	No description for 2j4rA was found.

Predicted Domain #2

Region A:
Residues: [238-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENGKVGNTLS DPCSLRGRTY DIDGIEFAGT GDLKQCLKLT YNLLNKDKPC SMDPCNFDGI  60
   61 SIPPVDFANT EFVGVSEFWY TTNDVFDMGG SYHFPNFYKK VDEYCGTEWE TMLSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [353-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYNKELTPST DENKLEKLCF KASWALNVLH EGFDVPKSNT SSNDAKDGLS VIPAYHSPFT  60
   61 SLEKIERTEV SWTLGQVLLY ASNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [437-572]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLLAKPEYAN YYMDPYGKLI ASPSKHWMRL FPNKLFFILS FIFCLFFLFS LVLFGYDPKR  60
   61 RQRFKKFLLR LQRRKAPYIM SANGSYEDIA DFSDDLEMSS PSKWHGPPIR TTSSHVLADR 120
  121 LSFTASRERT PRSPFP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits